Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq250 614 2e-171 >seq250 Length=47047 Score = 614 bits (680), Expect = 2e-171 Identities = 717/957 (75%), Gaps = 12/957 (1%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 |||||| | ||| | || |||||||| | | |||||||| | | |||| || Sbjct 1267 AACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCTACATTATTAACAGCTACT 1326 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| ||||| ||||||||| |||| ||||| |||||||| |||||||| ||||| || Sbjct 1327 -TCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGA 1385 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || | ||| | || || || |||||||| || || || || || |||| || Sbjct 1386 ACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCTGGTGCTGTTATTCCAAG 1445 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | || ||| || || | |||||||||||||||||||||||| ||| | || || Sbjct 1446 TTCTGC--TGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAG 1503 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CT 19826 ||| | |||||||| || | || || | || || ||||| | | || | || Sbjct 1504 TGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTTTTACTAGGTGTTGCT 1563 Query 19827 ATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTT 19886 |||| ||||||| || ||||||||||||||||| || |||| ||| | |||||||| Sbjct 1564 -TGCT-ACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCG 1621 Query 19887 GTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTG 19946 |||||| | ||||||||| |||||||| || |||| || || | |||||||| ||| Sbjct 1622 CTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTGATCTACCCGATTG 1681 Query 19947 GTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGT 20006 |||| || |||||||| |||| ||||||||| ||||| || ||||| ||||||| |||| Sbjct 1682 GTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACATTCAACTTCATGA 1741 Query 20007 TGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTG 20066 | ||||||||||| || ||||||||||| |||||||| |||||| | ||||| |||| Sbjct 1742 TTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAATTAGGTGTTGCTG 1801 Query 20067 GTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT- 20125 ||||||| ||||| || ||||||||||| ||||||||||| || || || | || | || Sbjct 1802 GTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTAAC-TTCTAGTTTA 1860 Query 20126 GTGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAA 20185 | ||||| || |||||| | ||| | ||||||||||||||||| || ||||||||| Sbjct 1861 ATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTCGGTCAAGAAGAA 1920 Query 20186 GAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCT 20245 || || |||||||| || || || |||||||||||||| ||||| || |||||||| ||| Sbjct 1921 GAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATATTCCAATATGCT 1980 Query 20246 TCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATT 20305 ||||||||| ||||| || ||||||||| | | | ||||| || ||||| ||| Sbjct 1981 AGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCAGTTGTAGGTATT 2040 Query 20306 TGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAAC 20365 ||||| | | | || || || ||||||||||| | || ||||||||||| ||| Sbjct 2041 TGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAATGGTTTCAACTTCAAC 2100 Query 20366 CAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGT 20425 || || | | |||| | | |||||||| ||| | ||||||||||| || | || ||| Sbjct 2101 CAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGCTGATATCATTAACCGT 2160 Query 20426 GCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 ||||| | || | || || |||||||| || || ||||| ||||||||| | ||| Sbjct 2161 GCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCATTAGAC 2217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148823473231212