Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq250 563 3e-156 >seq250 Length=47047 Score = 563 bits (624), Expect = 3e-156 Identities = 705/955 (74%), Gaps = 20/955 (2%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 |||||| | ||| | || |||||||| | | |||||||| | | |||| || Sbjct 1267 AACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCTACATTATTAACAGCTACT 1326 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| ||||| ||||||||| |||| || || |||||||| |||||||| ||||| || Sbjct 1327 -TCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGA 1385 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 ||| || ||||| | | || || || |||||||| || || || || || | || || Sbjct 1386 ACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCTGGTGCTGTTATTCCAAG 1445 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | || ||| || || | |||||||||||||||||||||||| ||| | || || Sbjct 1446 TTCTGC--TGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAG 1503 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CT 28954 ||| | |||||||| || | || || | || || ||||| | | || || || Sbjct 1504 TGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTTTTACTAGGTGTTGCT 1563 Query 28955 ATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTT 29014 |||| ||||||| || ||||||||||||||||| || |||| ||| | || ||||| Sbjct 1564 -TGCT-ACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCG 1621 Query 29015 GTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCG 29074 ||| |||| ||| ||||| || ||||| ||| |||| || ||| | ||||||| | | Sbjct 1622 CTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTGATCTACCCGATTG 1681 Query 29075 GTCAAGG----TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTAC 29130 ||||||| |||| | || | |||||||| |||||||| || || ||||||| | Sbjct 1682 GTCAAGGCAGCTTCTCT----GATGGTATGCCTTTAGGTATTTCTGGTACATTCAACTTC 1737 Query 29131 ATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTT 29190 ||| | || |||||||| || ||||||||||| |||||||| |||||| | || ||| Sbjct 1738 ATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAATTAGGTGTT 1797 Query 29191 GCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCG 29250 ||||| || || ||||| || ||||| ||||| ||||||||||| || || || | || | Sbjct 1798 GCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTAAC-TTCTAG 1856 Query 29251 CTT-GTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGA 29309 || | ||||| || |||||| | ||| ||||||||||||||||| || ||||| Sbjct 1857 TTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTCGGTCAAGA 1916 Query 29310 AGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATA 29369 |||||| ||||||||||| || || || || ||||||||||| ||||| || |||||||| Sbjct 1917 AGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATATTCCAATA 1976 Query 29370 TGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGG 29429 |||| |||||| || ||||| || ||||||||| | | | ||||| || ||||| Sbjct 1977 TGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCAGTTGTAGG 2036 Query 29430 GATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTT 29489 |||||||| | | | || || || ||||||||||| | || ||||| ||||| Sbjct 2037 TATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAATGGTTTCAACTT 2096 Query 29490 TAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAA 29549 ||||| || | | |||| | | |||||||| ||||| |||||||||||| | | || Sbjct 2097 CAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGCTGATATCATTAA 2156 Query 29550 TCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCA 29604 || |||||| | || | ||||| |||||||||||||| ||||| ||||||||| Sbjct 2157 CCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCA 2211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146660350654844