Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq250 585 7e-163 >seq250 Length=47047 Score = 585 bits (648), Expect = 7e-163 Identities = 765/1046 (73%), Gaps = 17/1046 (2%) Strand=Plus/Plus Query 18668 AAATTATGACTGCTACACTCGCAGCTC-CTAAGTCCCGAGTTAACCCTTGGGACTCTTTT 18726 ||||||||||||||||| | | | | | || | | |||| | ||||| ||| Sbjct 1187 AAATTATGACTGCTACATTAGAAAGACGCGAAAGCGCAAGTTTA----TGGGAACGTTTC 1242 Query 18727 TGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATG 18786 || ||||| || || || || |||||| | |||||||| |||||||| | | ||| Sbjct 1243 TGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATG 1302 Query 18787 ATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCC 18845 ||||| | | |||||||| | ||| ||||| ||||| ||| ||||||| ||||| Sbjct 1303 ATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGTTGCTGCTCCTCC 1361 Query 18846 TGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACAT 18905 || || |||||||| ||||| || || ||||| || | | || || || |||||||| Sbjct 1362 AGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACAT 1421 Query 18906 CATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATT 18963 || || || || || |||| || | || ||| || || | ||||||||||||||| Sbjct 1422 TATCTCTGGTGCTGTTATTCCAAGTTCTGC--TGCTATTGGTATTCACTTCTACCCAATT 1479 Query 18964 TGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTC 19023 ||||||||| ||| | || || ||| | |||||||| || | || || | || Sbjct 1480 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTA 1539 Query 19024 TTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATC 19081 || ||||| | | || || || |||| ||||||| || ||||||||||||||||| | Sbjct 1540 TTACACTTTTTACTAGGTGTTGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGCTACC 1597 Query 19082 GACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTG 19141 | |||| ||||| |||||||| |||||| | ||| ||||| ||||| || || ||| Sbjct 1598 GTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTG 1657 Query 19142 CGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTA 19201 | || ||| | |||| || |||||||||| ||| || | ||||||||| |||| Sbjct 1658 CTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTA 1717 Query 19202 TTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACC 19261 || |||||| ||||||| |||| |||||||||| ||||| |||||||| || ||||||| Sbjct 1718 TTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACC 1777 Query 19262 CGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACG 19321 | |||||| | ||||| |||||||| || || || || ||||| ||||| ||||||| Sbjct 1778 CATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACG 1837 Query 19322 GTTCGCTTGTTACGTCCTCGCTT-GTGCGTGAAACTACTGAAGAGGTATCTCAGAACTAT 19380 |||| || || || | || | || | |||||||| |||||| | | |||| |||||| Sbjct 1838 GTTCACTAGTAAC-TTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTAT 1896 Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || |||||||| || ||||||||||| |||||||||||||||||||| ||||| || ||| Sbjct 1897 GGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTT 1956 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500 ||||| | || ||||| || || |||||||| ||||| || || ||||| || Sbjct 1957 GGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTA 2016 Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 | | ||||| || || || |||||||| | | | ||| || ||||| || Sbjct 2017 GGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTT 2076 Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620 ||||| ||||| || ||||| ||||| || | |||||| | | |||||||| ||| | Sbjct 2077 AACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAAC 2136 Query 19621 ACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAAT 19680 ||||||||||| || | || ||||||||| | || | || || ||||| || ||||| Sbjct 2137 ACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAAC 2196 Query 19681 GCTCATAACTTCCCACTTGATTTGGC 19706 ||||| ||||||||| | || || || Sbjct 2197 GCTCACAACTTCCCATTAGACTTAGC 2222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141143748108012