Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq963 149 6e-31 seq1059 129 6e-25 seq1200 82.4 7e-11 >seq963 Length=27641 Score = 149 bits (164), Expect = 6e-31 Identities = 344/503 (68%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 46773 AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832 ||||||||| ||||||| ||| ||||||| | || ||| | | || ||||| Sbjct 17452 AAAAAGGCCGAGTGGGCTTTGACGTGGATCTC-ATCGCA--CGCATCCTTTGCAGAGCGT 17396 Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892 |||| || || || ||||||||| | ||||| || ||| ||| ||| || ||| Sbjct 17395 CTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCTTTCTGCGCAATCTTT 17336 Query 46893 TACATTAA-AACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCG 46951 | | || || | ||| | ||||| || || |||||||| || ||| |||| ||||| Sbjct 17335 TGGCTCAAGAAGCGCGGGC-TCATGCCTGGACTCACGTTCAGCAATGAGCTGATTTCGCG 17277 Query 46952 CGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA 47011 ||||| || || ||| ||||||||||| |||| |||| | | || | | || Sbjct 17276 AGACGAGGGTCTGCACTGCGACTTTGCGTGCCTCTTGTACAGCATGTGCCCGCAGAAGCT 17217 Query 47012 ATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCAT-CGAAAAGGAGT 47070 ||| || ||| | || | ||| | | | || || || | ||| ||||| | Sbjct 17216 GCCGAAC---GAAACGGTGCTCAACATCATCACGAGCGCTGTT-GCGTGCGAGAAGGAAT 17161 Query 47071 TTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAAC-GCACAGTCTATGTGCG-A 47128 || ||| || |||||||| || |||| | || |||||| || | | |||| ||| | Sbjct 17160 TTATTATTGACGCGCTGCCGTGCGACTTGATCGGGATGAACAGCGAACT-TATG-GCGCA 17103 Query 47129 ATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTA- 47187 ||||||||||||||| || || || ||| | | ||||| || ||||| | |||| Sbjct 17102 ATATATTGAGTTTGTCGCCGACCGCCTGCTCCAGTCCCTCGGGCA--CGAAAAAGTTTAC 17045 Query 47188 -ATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTT 47246 | || || || |||||||| | ||| | ||||||||||| || || ||||| ||| Sbjct 17044 CACGCCCGCAACCCGTTTGACTGGATGGAGCTGATTTCGCTCGAAGGGAAGACCAACTTT 16985 Query 47247 TTCGAGAAACGAGTCGGAGAGTA 47269 || ||||| || || |||||||| Sbjct 16984 TTTGAGAAGCGTGTGGGAGAGTA 16962 >seq1059 Length=17963 Score = 129 bits (142), Expect = 6e-25 Identities = 637/996 (64%), Gaps = 41/996 (4%) Strand=Plus/Plus Query 147454 TTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACG 147513 |||| || || ||||||| ||||| |||||| ||| || | | |||||| | | Sbjct 15845 TTCAGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTACTCAATG 15904 Query 147514 ATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATT-GCTTTTCCG 147572 ||||| | ||||| ||||||| || || | || ||||| || | ||| | Sbjct 15905 ATTTCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGAG 15964 Query 147573 ATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT 147632 | || || || ||| | |||||||||||| ||||||||| | |||| |||| | Sbjct 15965 TTGGCG-GCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCAC 16023 Query 147633 ---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTA 147689 ||||| ||| | |||| | | | || || |||||| ||||||||||| Sbjct 16024 CGCAAACCA---CAGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCGTTTTCGTA 16080 Query 147690 CCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACT--GA 147747 | ||||| | ||| || || || | ||| || || || | || | Sbjct 16081 CTTGGTGTACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGG-CGCTTCGT 16139 Query 147748 TGCGGACACATCAGCGACCACATGTC-GTCCGCGTTAACGCGTCGCATAAACAGATCCGG 147806 || || || | || |||| |||| |||| | | || || ||| ||||| ||||| Sbjct 16140 TGGGG-CAGAAGAGGCTCCAC-TGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGG 16197 Query 147807 CACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTT---GCG 147863 | |||||||||||| | ||||| ||||| | || || ||| ||| ||| Sbjct 16198 CGTCCACAGCGCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCG 16257 Query 147864 TTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGC 147923 || | || | | | |||||||||||||| || ||||||||| ||| | ||| Sbjct 16258 ---CAGGTCGAGGAACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGC 16314 Query 147924 ACCTTTACGCTTTCC---GCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCAC 147980 |||||| ||||| || |||||| || || | ||| | ||| || |||| |||| Sbjct 16315 ACCTTTGCGCTTACCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAG 16374 Query 147981 CATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG----GAATTGA--TCTTGCTGCCGCG 148034 ||| ||| | | |||| | | | ||| || ||| |||| | ||||| || | || Sbjct 16375 CATTGGTACAATGCCGTTTGACGAGCCATTTGTGCCCCGAATGTAGCTCTTGGTGGCACG 16434 Query 148035 G--GCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCG 148092 | | ||| | | | | | || ||||||||| | |||| || || | ||| Sbjct 16435 GATGTTCGAAATG-GAG-------AGACCGATGCCGCCGGCTGACTTGGAAATCACCGCG 16486 Query 148093 CAATCGCC-CAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAA 148151 || ||| || || |||||||| ||||| ||| | ||| | | |||| ||| Sbjct 16487 CAG-CGCTTCAGCGTATCATAGATGCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAA 16545 Query 148152 ACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGT 148211 ||||| | | ||||| | |||| | || ||| | || || || ||||| Sbjct 16546 GCACGAGCTGAGCTGCGGGCGCGGCGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGT 16605 Query 148212 AAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTG 148271 || || ||||| || ||| |||||||| | | || |||||||| ||| Sbjct 16606 GAAGAACTTTTGCGACAACATTTCGTACGTCTCGAGAACGCTCGGGATGTCGTGCATGTG 16665 Query 148272 AATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGAT 148331 ||||| | || |||||||| ||||||||||| ||||| || | || || ||| || Sbjct 16666 GATGCCTACTGCCACGCGCATCAGCATGTGCTGCGGTCGCTCCACCACCTGTCCGTTCAT 16725 Query 148332 CTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAG 148391 | ||| || | |||||| || ||| | |||||||| | ||| ||||| | Sbjct 16726 GCGCAAAAGGTACGAACGTTCGAGCGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCG 16785 Query 148392 CTCGTAAGCGATGGCCGCATCTAGTGTCTCAGCATG 148427 |||||| ||| |||||||| || ||||| || || Sbjct 16786 GTCGTAAATGATCGCCGCATCGAGCGTCTCGGCGTG 16821 >seq1200 Length=24482 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| ||||| || | | | ||||| || |||||||||||||| | || Sbjct 18675 CGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTG 18734 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||| || || ||||| || || | |||| | ||||| |||||||| || ||||| Sbjct 18735 CGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGGATGCCC 18794 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||| || || | | || | || || | | |||||| |||| | Sbjct 18795 TCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGC 18854 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || | ||| || || ||||| || || | || |||||||||| Sbjct 18855 GTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGA 18897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476593243673040