Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq963 297 3e-74 seq2216 167 3e-35 seq1059 154 2e-31 seq2725 91.5 2e-12 seq227 91.5 2e-12 seq2120 87.8 3e-11 >seq963 Length=27641 Score = 297 bits (328), Expect = 3e-74 Identities = 384/525 (73%), Gaps = 8/525 (2%) Strand=Plus/Minus Query 1455752 CTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTT 1455811 || ||||| ||| | |||| || ||| |||||||| || ||| |||||| ||||| Sbjct 17821 CTTTTCCCGATCAGGCACCACGACATCTGGAAAATGTAC-AAGAAGCACGAGGCGTCCTT 17763 Query 1455812 TTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGA 1455871 |||||||||||||| ||||||| || | ||| | | || ||| ||||| | | | Sbjct 17762 CTGGACCGCCGAGGAAATCGACCTGAGCTCGGACTTGCTGCAGTGGCGATCGCTCAACAA 17703 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 || |||| || ||||||||||| || |||||||| || |||||| || || |||| Sbjct 17702 GGATGAGCAGCACTTCATCAAGCATGTGCTCGCCTTCTT-CGCCGCATCGGACGGAATCG 17644 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||||| || || ||||| ||| || ||||| | || || || || | | Sbjct 17643 TTCTGGAGAATTTGTGCGAGCGCTTCTCGAAGGACGTCCAGATCCCGGAAGCGCGCTGCT 17584 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 |||| || ||||||||||| || || ||||||||||| ||||| ||||| | || || | Sbjct 17583 TTTATGGCTTCCAGATCGCGATGGAGAACATCCACTCGGAAACGTACTCCTTGCTCATTG 17524 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 |||| ||||| ||||| | || ||| |||| ||||| | ||| || || | | | Sbjct 17523 ACACGTACGTGTCCGACCCAGAGGAAAAGAACCATCTCTTCCACGCTATGGAAGAGATTC 17464 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | |||| |||||||||||| ||||| ||| ||||||| || | || || Sbjct 17463 CCTGCGTGAAGAAAAAGGCCGAGTGGGCTTTGACGTGGATC-TCATCGCACGCATC---- 17409 Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 |||||| ||||| || |||| |||||||| ||||| || || |||||||| ||| ||| Sbjct 17408 CTTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCTTT 17349 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| ||||||||||||||||||||||| |||||||| || || Sbjct 17348 CTGCGCAATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCTGGACT 17304 Score = 113 bits (124), Expect = 6e-19 Identities = 232/333 (70%), Gaps = 18/333 (5%) Strand=Plus/Minus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACC 1456507 ||| ||||||| |||||||| || || | |||| ||| | | |||| | ||| | Sbjct 17269 GGTCTGCACTGCGACTTTGCGTGCCTCTTGTACAGCATGTGCCCGCAGAAGCTGCCGAAC 17210 Query 1456508 GAC---GTGCCCAAGCAGATCATCGTCGAG-GCCGTCGAGATCGAGAAAGAGTTTGTCAG 1456563 || |||| ||| |||||| |||| || || | | |||||| || ||| | | Sbjct 17209 GAAACGGTGCTCAAC---ATCATCA-CGAGCGCTGTTGCGTGCGAGAAGGAATTTATTAT 17154 Query 1456564 CGAGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATT 1456622 || |||||||| | | ||||| |||||| || | | | ||| || || ||| Sbjct 17153 TGACGCGCTGCCGTGCGACTTGATCGGGATGAACAGCGAAC--TTATGGCGCAATATATT 17096 Query 1456623 GAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG 1456682 || ||| |||||||||||||||||| | | ||||| || | ||| |||| ||| Sbjct 17095 GAGTTT-GTCGCCGACCGCCTGCTCCAGTCCCTCGGGCACGAAAAAGTT-TACC--ACGC 17040 Query 1456683 CC--AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGA 1456740 || |||||||| ||||||||| |||| |||||||| || |||||||||||||| || Sbjct 17039 CCGCAACCCGTTTGACTGGATGGAGCTGATTTCGCTCGAAGGGAAGACCAACTTTTTTGA 16980 Query 1456741 GCGCCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 | || || || |||||| |||||||| || Sbjct 16979 GAAGCGTGTGGGAGAGTACCAAAAGGCCGGTGT 16947 >seq2216 Length=6717 Score = 167 bits (184), Expect = 3e-35 Identities = 318/461 (69%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 332879 AGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCCAGG 332938 ||||| || || || ||| | || |||||||| | ||||||| ||||||||||| || Sbjct 5462 AGGATTGCGCAGCGCGACTGGATGGGCTCGATGATCTTTGACGAGGTGTTGCAGGCAAGC 5521 Query 332939 GCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCCGCC 332998 || || || ||||| ||| | ||||||||| ||||| ||||| ||||| ||| Sbjct 5522 GCGAAGCGGGTCGTGGCGGTGAACACCTCCATGGTCCTTCGGAGTGCCTGCTGGGCGGCC 5581 Query 332999 GGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGATCA 333058 || | |||| |||||||| ||||| | ||||||||| ||| ||||||| Sbjct 5582 TCTGTCATCGAGTCTGCCTCGTCCAGGATCACGATCTTGTGCATTCCGGGCGGCAGCGTG 5641 Query 333059 ACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCC 333118 ||| ||||| ||| |||||| | |||||||||| || | ||||||||| || Sbjct 5642 ACCTTTTTCTGGGCAAACGACTTGATGGTGCTGCGCACGACATCAATGCCGCGCTCATCG 5701 Query 333119 GACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGCCAGG 333178 || |||||||| || || |||||||| | | || | || | | | | ||||| Sbjct 5702 GAAGCGTTGAGCTCCAGGACGGCCTCCTTCACCGCGTCGCCGAGCATCTCTCTGGCCAGC 5761 Query 333179 CACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGC-CAGCAAGAGGTTGGGCAT 333237 ||||| |||| ||||||||| ||| ||||| ||||| |||||| | || ||||| Sbjct 5762 GCCGCGACAGTCGTTGTCTTGCCCACGCCCGGCGG-CCCGCTCAGCAACATATTCGGCAT 5820 Query 333238 GTTGCCGT-CGGCG---GCCAGCGCCTTGAGGTAG-GCAACGGCGTGCTCGTTGCCGACA 333292 || |||| | ||| | ||||| ||| | || | ||| ||||||| || || Sbjct 5821 ATTTCCGTGCTGCGCAATCAAGCGC----AGGCGGCCCACCAGCG-GCTCGTTCCCCACC 5875 Query 333293 ATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGG 333333 | || || ||| | || ||||||||||| | ||| || Sbjct 5876 ACATCCTCCAGCTTTACCGGCCGGTACTTTTCCACCCACGG 5916 >seq1059 Length=17963 Score = 154 bits (170), Expect = 2e-31 Identities = 222/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 259873 CGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCT 259932 ||| |||| || ||||| ||||||| |||| ||||| || |||| || | Sbjct 16645 CGTTCTCGAGACGTACGAAATGTTGTCGCAAAAGTTCTTCACGCATGCCTCGCCGACTTT 16586 Query 259933 CTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGC 259992 || ||||| ||||||||||||||||| |||||||||||| || |||||| | Sbjct 16585 GTTCAATGCAAGCACGCCGCGCCCGCAGCTCAGCTCGTGCTTTCTGCTGACCATGAAAGA 16526 Query 259993 CGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGC 260052 || |||||||| ||||||||||| ||||| |||| |||||| | || |||||| | || Sbjct 16525 AGACTCGATCGAAGGCATCTATGATACGCTGAAGCGCTGCGCGGTGATTTCCAAGTCAGC 16466 Query 260053 CGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCAC 260112 ||||||||||||| | || || | || ||| | |||| | |||||| Sbjct 16465 CGGCGGCATCGGTCTCTCCATTTCGAACATCCGTGCCACCAAGAGCTACATTCGGGGCAC 16406 Query 260113 CAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTA 260172 || ||| ||| |||||| |||| || ||||| || || | || ||||| ||||| || Sbjct 16405 AAATGGCTCGTCAAACGGCATTGTACCAATGCTGCGAGTGTACAATGACACAGCGCGTTA 16346 Query 260173 CGTCGACCAGTGC 260185 ||| || ||| || Sbjct 16345 CGTGGATCAGGGC 16333 Score = 107 bits (118), Expect = 3e-17 Identities = 119/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 ||||| || |||||||| || || |||||||||||| | || ||||||||||||||| | Sbjct 16335 GGCGGTGGTAAGCGCAAAGGTGCGTTTGCCTGCTACATTGAGCCGTGGCACGCCGACATT 16276 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | || ||||| |||||||||||||| || ||| | | ||||| Sbjct 16275 TTTGAGTTCCTCGACCTGCGCAAGAACCACGGCAA------GGAAGAGTCACGTGCGCGT 16222 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATG 261946 ||||||||||||| ||||||||| |||||||| ||| Sbjct 16221 GATCTCTTTTACGCGCTGTGGACGCCGGACCTGTTCATG 16183 Score = 102 bits (112), Expect = 1e-15 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| ||| ||||||||||| | | || |||| |||||| || || | |||||||||| Sbjct 15395 AGCACGGCTTGCGCAACTCGCTCTTGGTAGCGCCCATGCCGACTGCTTCCACGTCGCAGA 15336 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 | ||||| |||| |||| || || |||| |||||||||||||||||||| | Sbjct 15335 TTCTGGGTAACAACGAGTGCTTTGAACCGTACACGTCAAACATCTACACGCGCCGCGTTC 15276 Query 263033 TCTCGGGCGACTTTACCGTGGTCAAC 263058 || ||||||| || |||| || ||| Sbjct 15275 TCGCGGGCGAGTTCGCCGTTGTTAAC 15250 >seq2725 Length=19496 Score = 91.5 bits (100), Expect = 2e-12 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1816049 CCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAGGCCGCCG 1816108 ||||| |||| || ||| || | | ||| ||| | ||||||||| |||| || Sbjct 11308 CCGTCCTCGCCGTACAAAAATTGAATCACGTCTCCGACGCTGTTGCGCACCGTGCCGTCG 11249 Query 1816109 CGCTTGATCTGCAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC-C 1816167 | | | |||| ||||||| |||||| || |||||||||||||| ||| | Sbjct 11248 TACCGCACCATCAGGTCTTCCATCGCCTTGATCAGGCGTCGCTGGATGTAGCCT-GTCTC 11190 Query 1816168 GGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACAT 1816227 ||| || ||||| || ||||| | || ||||| |||||||| || ||| || || | Sbjct 11189 GGCTGTTTTGACCGCAGTGTCAATGAGACCCTCACGGCCGCCCATTGCGTGGAAGAAAAA 11130 Query 1816228 CTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284 |||| | | ||||||||| ||| ||||| ||||||||||||| ||| || Sbjct 11129 CTCGGTGGGCGTCAGGCCGCGCAAGTATGAGTTCTCCACAAAGCCGCGGGACTCTGG 11073 >seq227 Length=16755 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||||||||| |||||||| ||||| || || ||| || || || Sbjct 4401 ATTTACAAGGTGCTGAAGCAGGTACACCCGGACAC-----GGGCATT-TCGTCGAATGCC 4348 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||||||||||| ||| | |||| ||||| | |||| || | Sbjct 4347 ATGTCGATCATGAACTCGTTTGTCACGGACCTCTTCGAGCGCATTGCGGCCGAAGCAGCC 4288 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| | | | |||| ||| ||| || ||||||| || |||||||| || Sbjct 4287 AAGCTGTCATCATACTCCAAGACCAAGACGCTCACGTCGCGCGAAATTCAGACCGCGGTT 4228 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | ||| ||||| ||||| | |||||| || || ||||| |||| Sbjct 4227 AGGCTGTTGTTGCCTGGCGAGCTGGCGAAGCACGCGGTGTCGGAGGGTACCA 4176 >seq2120 Length=9606 Score = 87.8 bits (96), Expect = 3e-11 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 1601347 GACGGCC-TTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGT 1601405 |||| || ||||| |||||||||||||||| |||||| |||| ||||| | |||||||| Sbjct 2801 GACGCCCATTGCT-TGCTTGCCCATGGCCGACTGGTACGTGTTACGCGGGGACTGGTTGT 2743 Query 1601406 GGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGA 1601465 ||| | ||||| ||||| ||||| || |||||| || | ||||| | |||| Sbjct 2742 GGTCAGGGAACGGAATGATCGACGCACACACGCCCAACACCATGGCTGGGTGAATCTCGC 2683 Query 1601466 CGTGCGT 1601472 |||||| Sbjct 2682 AGTGCGT 2676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177520494160268