Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1200 131 2e-25 seq970 113 4e-20 seq2751 104 2e-17 >seq1200 Length=24482 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | || |||||| ||||||||||| || | | || ||| |||| Sbjct 18683 CAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCGTC 18742 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || |||||||| ||||| || ||||| |||||||| || | || | || ||||||||| Sbjct 18743 CTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGGATGCCCTCCTTGTC 18802 Query 35644 CATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | ||||| ||| | |||| | | |||||| || |||||||| | |||||||| Sbjct 18803 CTGAATCTTCGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGCGTGATCG 18861 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||||| || |||||||| |||||||| Sbjct 18862 TCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq970 Length=23808 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || || || |||||| || ||||| || || | | Sbjct 22506 CCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGAC 22565 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| ||||||||||| |||||||| ||||| ||||||||||| | || Sbjct 22566 AGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGG 22625 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| ||||| ||| | | | | | ||||| || || ||| Sbjct 22626 ATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 22685 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| || || ||||| | || || || || |||||||| Sbjct 22686 TCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 22732 >seq2751 Length=18403 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 35590 CTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGAT 35649 |||||| || || || |||| ||||||||||||| || | || |||||||||| || Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAAT 18344 Query 35650 CTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACC 35709 ||| ||||| | | | | ||||||| ||| |||||||| | |||||| || || || Sbjct 18343 CTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCC 18284 Query 35710 CGTCAAAGTTTTCACAAATATCTGCATTCT 35739 |||| || |||||||| |||||||| || Sbjct 18283 GGTCAGCGTCTTCACAAAAATCTGCATGCT 18254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450776616351120