Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1200 122 9e-23 seq970 105 7e-18 seq2751 89.7 5e-13 seq2049 84.2 2e-11 seq963 84.2 2e-11 >seq1200 Length=24482 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| ||| | ||| || ||||| ||||| |||||||||||||| Sbjct 18669 CCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAG 18728 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || || || ||||| ||||||||||| ||||| Sbjct 18729 AGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGG 18788 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | ||||| || || ||||| Sbjct 18789 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACC 18848 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || | || || || || || ||||| Sbjct 18849 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq970 Length=23808 Score = 105 bits (116), Expect = 7e-18 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || | ||| | || || ||||| || ||||| ||||| || |||| Sbjct 22515 AGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTG--ACAGTGTTC 22572 Query 134556 GA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | ||| || ||||| ||||| ||||||||||| |||||||| || ||||| ||||||| Sbjct 22573 GTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTT 22632 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || |||||||| || ||||| || | ||||| || || || || || | | Sbjct 22633 CCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAACG 22692 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || || || || || | || || |||||||| ||||| ||| Sbjct 22693 TGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGTTG 22736 >seq2751 Length=18403 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || || ||||||| |||||||| || ||||| ||||| || || || ||||| Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAAT 18344 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 || || || || | ||||||||||| ||||| ||||| || ||||| || || Sbjct 18343 CTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCC 18284 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | || || || ||||| ||||| Sbjct 18283 GGTCAGCGTCTTCACAAAAATCTGCAT 18257 >seq2049 Length=21382 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 |||||| | || |||| ||| | ||| ||||| || ||||| || ||||||||||| | Sbjct 21254 TCCTCCACGCAGGCGCAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCTGA 21313 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || | ||| | ||| || ||||| || || || ||||||| |||||||| || |||| Sbjct 21314 CAGC-GTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCG 21372 Query 134605 GTATGCCTTC 134614 | ||||| || Sbjct 21373 GGATGCCCTC 21382 >seq963 Length=27641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 21707 TGTTGTAGTAGAGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGT 21766 || |||| |||| || ||||| | | ||||| |||||||| |||||||||| || | Sbjct 17233 TGCTGTACAAGAGGCACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCAT 17292 Query 21767 TGCTGAACGTGAGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCA-AAG 21825 ||||||||||||| || ||||| | || || || || | |||| |||| |||| || Sbjct 17293 TGCTGAACGTGAGTCCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTG-CGCAGAAA 17351 Query 21826 CTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACGCCACCA 21868 ||||| ||||| | || || || ||| ||||| |||| Sbjct 17352 GAGCCGGAGAAAAAAATTCCTTCGACTGCGGCAAACGCGACCA 17394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505379359115280