Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq250 697 0.0 seq316 590 7e-164 seq181 109 6e-19 >seq250 Length=47047 Score = 697 bits (772), Expect = 0.0 Identities = 756/1000 (76%), Gaps = 2/1000 (0%) Strand=Plus/Plus Query 157703 AACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACT 157762 |||||||| ||| | |||||||| |||||| | ||||||||||| || | | || ||| Sbjct 1267 AACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCTACATTATTAACAGCTACT 1326 Query 157763 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGA 157821 ||||| |||||| | || ||||| |||||||| || || || ||||| || ||||| || Sbjct 1327 -TCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGA 1385 Query 157822 ACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAG 157881 ||||||||||||||| | | || ||||||||||| ||||||||||| ||| |||| || Sbjct 1386 ACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCTGGTGCTGTTATTCCAAG 1445 Query 157882 TTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTG 157941 ||| || || ||| | ||||||||||| || |||||||| || ||| | |||||||| Sbjct 1446 TTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTG 1505 Query 157942 GCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGC 158001 | | || |||||||| | || || | ||||| ||||| | | || | | Sbjct 1506 GTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTTTTACTAGGTGTTGCTTG 1565 Query 158002 CTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGT 158061 ||| ||||| |||||||||||||| ||||||||||||||||| || |||||| ||| Sbjct 1566 CTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGT 1625 Query 158062 AGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCA 158121 |||| ||||||||||| || || || | ||| |||||| | |||| || | ||||| Sbjct 1626 TGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCA 1685 Query 158122 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 158181 ||| ||||| |||| ||||||| | ||||| |||||||| || |||| |||| |||| Sbjct 1686 AGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGT 1745 Query 158182 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158241 ||||||||| || || ||||| || |||||||| ||||| | ||||||||||| || Sbjct 1746 ATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGT 1805 Query 158242 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCG 158301 ||| ||||||||||| ||| ||||||||| || || || ||||| | | || Sbjct 1806 ATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCG 1865 Query 158302 TGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGAC 158361 |||||| ||||||| || || ||||| ||||| |||||||||||||||||||| || Sbjct 1866 TGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC 1925 Query 158362 CTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 158421 || ||||| ||||| || ||||| ||||| |||||||| || |||||||| ||| || Sbjct 1926 TTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTT 1985 Query 158422 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 158481 ||||||||| ||||| | ||||||||| | | | |||||| ||||| || || ||||| Sbjct 1986 CAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTT 2045 Query 158482 CACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 158541 || | | || ||||| ||||| || ||| | || ||||||||||||||||| || Sbjct 2046 AACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATC 2105 Query 158542 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGG 158601 | |||| | || |||||||| | ||||| ||||| ||| | | ||||| ||| Sbjct 2106 TGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGCTGATATCATTAACCGTGCTAA 2165 Query 158602 TCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGC 158661 | ||||||||||||||||||||||||||||| |||||||||||| | || | || | Sbjct 2166 CTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTC 2225 Query 158662 TGCTGAGTCTACACCTGTAGCACTCATCGCACCATCCGTT 158701 || ||| ||| |||||| ||| | | || ||| | ||| Sbjct 2226 TGGTGAATCTCTACCTGTTGCATTAACAGCTCCAGCTGTT 2265 >seq316 Length=14323 Score = 590 bits (654), Expect = 7e-164 Identities = 747/1022 (73%), Gaps = 6/1022 (1%) Strand=Plus/Plus Query 159373 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGG 159432 || ||||||||| | | ||||||||| | || |||| || ||||| || | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 159433 TCTGGACTCCTACTTCTTCCCACTGCT--TATATGGCCATTGGCGGTTGGCTTACTGGCA 159490 ||||| | | || || || |||| ||| | ||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 159491 CGACTTTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTA 159550 | |||||| | || |||||| || || ||| | || ||||| ||| | |||||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 159551 ATTTTCTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 159610 | || | || || || || ||||| || ||| || |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 159611 TT-TGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGG 159669 || ||||| || || |||||||||| ||| | | ||||| || | || || ||||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 159670 TCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAA 159729 | ||| | ||| | || || || || | || ||||||||| |||| || ||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTTTGTTTACGTCAGTTTGAG 10505 Query 159730 ATTGCTCGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 159789 ||||| | || || ||| | | ||||| || |||||||| || || || ||||| || Sbjct 10506 ATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCT 10565 Query 159790 GTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCT 159849 || || || ||||| | || ||||| | || || || ||||| ||||| ||| Sbjct 10566 GTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCT 10625 Query 159850 AGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGG 159909 ||||| || || || || ||||||||||| | || ||| | |||||||| || |||||| Sbjct 10626 AGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGG 10685 Query 159910 ACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGT 159969 || | || || |||||||||||||| || |||||||| || ||||| || | || ||| Sbjct 10686 ACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGT 10745 Query 159970 GCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACA 160029 || ||||||||||||||||| || || || || ||||||||||| || || ||||| Sbjct 10746 GCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACA 10805 Query 160030 TTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGC 160089 |||| || ||| || |||||| ||||| || ||||| ||||| || |||||||| Sbjct 10806 TTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 160090 TTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATG 160149 || ||||| || || || |||||||| ||||||||||| | ||||| ||||| || ||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 160150 TTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTC 160209 |||||||| || |||| ||| | |||||| || ||||||||| | || | || || Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTA 10985 Query 160210 AACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTT 160269 || | | ||||| || || || |||||| ||||||| ||||| |||||||||||| Sbjct 10986 AATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTT 11045 Query 160270 GAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCT 160329 || || ||||| || || || || |||||||| ||||| ||||||| |||||||| | Sbjct 11046 GAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCA 11105 Query 160330 GCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCA 160389 ||||| || |||||||||||||| ||||| ||||| || || || | || ||||| Sbjct 11106 CAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGCC 11165 Query 160390 CT 160391 || Sbjct 11166 CT 11167 >seq181 Length=69431 Score = 109 bits (120), Expect = 6e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 158844 TACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGT 158903 |||||| ||||||||||||||||| ||| |||||| || ||||| || | |||||| Sbjct 20308 TACATTTTAGACGCTGCAGAAGAGCAAGGGGTTGATCTTCCGTATTCTTGCAGAGCTGGT 20367 Query 158904 GCCTGTTCTTCCTGTGCTGGTAAACTTGTCAG-CGGAACTGTTGACCAAAGCGATCAGTC 158962 || || ||| | || ||||||||| | |||| || || |||| ||| || || || Sbjct 20368 GCGTGCTCTACTTGCGCTGGTAAA-GTATCAGAAGGTACGATTGATCAATCTGACCAATC 20426 Query 158963 ATTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCAC 159022 ||| || ||||| ||||| | || | |||||| | | || || ||| ||||||| || Sbjct 20427 ATTTTTAGATGACGATCAAACTGGTGCTGGATTTGTTTTAACTTGCGTAGCTTATCCTAC 20486 Query 159023 TTCTGATTG 159031 || ||||| Sbjct 20487 ATCAGATTG 20495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573002411320800