Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq250 668 0.0 seq316 495 4e-135 seq181 111 2e-19 seq1212 82.4 9e-11 >seq250 Length=47047 Score = 668 bits (740), Expect = 0.0 Identities = 774/1037 (75%), Gaps = 6/1037 (1%) Strand=Plus/Plus Query 159951 TGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 160010 |||||| ||||||| ||||| || || | ||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 160011 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGT 160069 || ||| | |||||||| || | || |||| || ||||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 160070 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 160129 |||||||| || || || || || || ||||||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 160130 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTT 160189 ||||||||||| ||||||||||| ||| ||||| ||| || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 160190 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 160249 ||| || || |||||||| || || | || |||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 160250 ACTCGTAGTATTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTGAGTGGGAA 160307 || | ||||| ||||| | | || | || ||| || ||||| |||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGC-TACATGGGTCGTGAGTGGGAA 1587 Query 160308 CTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCT 160367 ||| ||||||||||||||||| || |||||| ||| |||| ||||||||||| || Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 160368 GCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATG 160427 || ||| ||||||||||| | | || || | |||||||| ||||| |||| |||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 160428 CCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATC 160487 ||| | ||||| |||||||| || |||| |||| ||||||||||||| || || || || Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 160488 CTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCT 160547 || ||||| || |||||| | || |||||||| ||||| ||||||||| | ||| | Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 160548 GCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCA 160607 ||||||||||| || || ||||| | | |||||||| ||||||| || || Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 160608 CAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCAT 160667 ||||| ||||| |||||||||||||| ||||| || || ||||| || || || ||| Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 160668 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCAC 160727 |||||||| |||||||| || ||||||||||| ||||||||||| |||||||||||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 160728 TTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACC 160787 |||||| | | |||||| || || || || ||||| || || | ||| || Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 160788 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGT 160847 ||||| || ||| | || ||||||||||||||||| || | | || | ||||||||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 160848 GTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCAT 160907 ||| | ||||| ||||| || | | || |||||| | |||||||||||||||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 160908 GAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGAGTCAACTCCTGTTGCT 160967 ||||||||||| |||||||||||| | ||| | || ||| ||| || |||||||| Sbjct 2188 GAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 Query 160968 CTCACCGCACCAGTTGT 160984 | || || |||| ||| Sbjct 2248 TTAACAGCTCCAGCTGT 2264 >seq316 Length=14323 Score = 495 bits (548), Expect = 4e-135 Identities = 730/1029 (71%), Gaps = 6/1029 (1%) Strand=Plus/Plus Query 161682 GGGTGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 161741 || |||||||| | | || |||||| | || | || ||||| ||||| | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 161742 TCTGGACTTCTTCTTCTTCCCACTGCT--TATCTTGCTATTGGCGGTTGGCTTACTGGCA 161799 ||||| | | || || || |||| |||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 161800 CAACTTTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAA 161859 | ||||| | ||| |||||||| |||||| | || ||||| || | || ||| | Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 161860 ACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTC 161919 |||| | ||||| ||||| ||||||||| | |||||| || ||| || || ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 161920 TC-TGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGG 161978 | ||||| || || |||||||| |||||| | ||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 161979 AATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAA 162038 | |||| | || | ||||| || || | ||||| || || | ||||||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTTTGTTTACGTCAGTTTGAG 10505 Query 162039 CTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 162098 | ||| | ||| | ||| | | || || || |||||||| || || || ||||| || Sbjct 10506 ATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCT 10565 Query 162099 GTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCG 162158 || || || || || | || || || || || || | ||||||||||| ||||| Sbjct 10566 GTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCT 10625 Query 162159 TCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGG 162218 ||||| || || || ||||||||||| | || || | || || || ||||||||| Sbjct 10626 AGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGG 10685 Query 162219 ACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCT 162278 || | || || |||||||||||||| || |||||||| || ||||| || | ||| | Sbjct 10686 ACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGT 10745 Query 162279 GCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACC 162338 ||||| || || | || ||||||||||| |||| || ||||| || || |||| Sbjct 10746 GCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACA 10805 Query 162339 TTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGC 162398 |||| || ||| | | || || ||||| || ||||| ||||| || |||||||| Sbjct 10806 TTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 162399 TTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATG 162458 || ||||| || || || ||| |||| ||||||||||| | ||||| ||||| || ||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 162459 TTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTC 162518 |||||||| || |||| ||| | |||||| || ||||||||| | || | || | Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTA 10985 Query 162519 AACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTT 162578 || | | ||||| || || || |||||| | ||||| ||||| |||||||| ||| Sbjct 10986 AATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTT 11045 Query 162579 GAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCT 162638 ||||| ||||| ||||| || ||||| | || ||||| | ||||||||| | || | Sbjct 11046 GAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCA 11105 Query 162639 GCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCC 162698 || || || ||||| |||||||| |||||||| || ||||| || | || |||||| Sbjct 11106 CAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGCC 11165 Query 162699 CTTTAATAA 162707 ||||||||| Sbjct 11166 CTTTAATAA 11174 >seq181 Length=69431 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||||||||| || ||||||||| ||| |||||| || |||||||| | |||||| Sbjct 20308 TACATTTTAGACGCTGCAGAAGAGCAAGGGGTTGATCTTCCGTATTCTTGCAGAGCTGGT 20367 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || |||||| | || || |||||| | |||||| | || || |||||||| || Sbjct 20368 GCGTGCTCTACTTGCGCTGGTAAAGTATCAGAAGGTACGATTGATCAATCTGACCAATCA 20427 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 || || ||||| || || | || ||||||| |||| || || || || |||||||| Sbjct 20428 TTTTTAGATGACGATCAAACTGGTGCTGGATTTGTTTTAACTTGCGTAGCTTATCCTAC 20486 >seq1212 Length=27810 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/89 (83%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 18086 ATGGGAGTGTGGCGGAATCGGTAGACGCACCAGACTTAAAATCTGTTGAGCAATAT-GCT 18144 ||||| |||||| ||||| ||||||| || ||||||||||||||||||| | |||| | | Sbjct 7303 ATGGGGGTGTGGTGGAAT-GGTAGACACAACAGACTTAAAATCTGTTGATC-ATATCGGT 7246 Query 18145 CGTGAGAGTTCAAGTCTCTCTACTCCTAT 18173 ||| || ||||||||| || | | ||||| Sbjct 7245 CGTAAGGGTTCAAGTCCCTTTGCCCCTAT 7217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559482920686800