Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq250 681 0.0 seq316 457 1e-123 seq181 104 3e-17 >seq250 Length=47047 Score = 681 bits (754), Expect = 0.0 Identities = 774/1036 (75%), Gaps = 2/1036 (0%) Strand=Plus/Plus Query 180972 TGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 181031 |||||| ||||||| ||||| || || | ||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 181032 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGT 181090 || ||| | |||||||| || | || |||| ||| ||||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 181091 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 181150 |||||||| || || || || || || ||||||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 181151 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTT 181210 ||||||||||| ||||||||||| ||| ||||| ||| || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 181211 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 181270 ||| || || |||||||| || || | || |||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 181271 ACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACT 181330 || | || || ||||| | | || || | |||||||| ||||| |||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 181331 CTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGC 181390 ||||| ||||||||||| || |||||| |||||||| |||||||||||| ||||| Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 181391 AGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCC 181450 ||| ||||||||||| | |||| || | |||||||| |||||||| | ||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 181451 ACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCT 181510 | || || |||||||||||||||| |||| |||| |||||||| ||||| |||||||| Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 181511 GATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGC 181570 ||||| || |||||| || ||||| || |||||||||||||| || || |||||||| Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 181571 AATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACA 181630 ||||||||||| | || || ||| | ||||||| || ||||||| ||| || Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 181631 GAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGG 181690 |||||||||||||||||||| ||||||||||| || || ||||| || || || || || Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 181691 TTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTT 181750 |||||||||||| || || |||||||||||| ||||||||||| |||||||| ||||| Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 181751 CTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCAT 181810 |||| | | |||||| || || || || ||||| || | | ||| || || Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTAT 2069 Query 181811 GGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGT 181870 ||| |||||| | ||||| |||||||||||||| ||| | | ||| | ||||| ||||| Sbjct 2070 GGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGT 2129 Query 181871 CCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGA 181930 | ||||| ||||| || | | |||||||| | || |||||||| ||||| || Sbjct 2130 AATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGA 2189 Query 181931 GCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGAGTCCACACCTGTGGCCTT 181990 ||| ||||| ||||||||||| | || | || | | ||| || |||||| || || Sbjct 2190 GCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATT 2249 Query 181991 GATTGCTCCTTCTGTT 182006 | ||||| ||||| Sbjct 2250 AACAGCTCCAGCTGTT 2265 >seq316 Length=14323 Score = 457 bits (506), Expect = 1e-123 Identities = 722/1025 (70%), Gaps = 12/1025 (1%) Strand=Plus/Plus Query 182355 GGGTGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGG 182414 || ||||| ||| | | || |||||| | || | || || ||||| || | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 182415 TCTGGACTCCTACTTCTTCCCACTGCT--TATCTTGCCATTGGCGGTTGGCTTACTGGGA 182472 ||||| | | || || || |||| ||||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 182473 CAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTA 182532 | ||||||| || |||||| || || ||| | || ||| || | |||||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 182533 ACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 182592 |||| | || || || || || || || ||| || |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 182593 TT-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGG 182651 || ||||| || || |||| || ||||| | ||||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 182652 AATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTA-GGCAATTTGA 182710 | ||| | ||| | || || || || | || || ||||| || ||| | || ||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 182711 ACTTGCTCGCCTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGC 182770 |||| | || | || | |||||||| || || ||||||||||| || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 182771 TGTATTCG--TCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCG 182828 ||| |||| ||||| | || | || |||||||| || || | ||||||||| || Sbjct 10565 TGTGTTCGTATCAGTATTTT--TAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCT 10622 Query 182829 CCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAAC 182888 || |||||||| || || ||||| || || | || ||| | |||||||| || ||| Sbjct 10623 CCTAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAAC 10682 Query 182889 TGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTC 182948 ||||| | || || |||||||||||||| || |||||||| || ||||| || | | Sbjct 10683 TGGACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTA 10742 Query 182949 AGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAAC 183008 ||||||||||||||| || || || |||||||| | ||||||||| || || || Sbjct 10743 TGTGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGAC 10802 Query 183009 ACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAAT 183068 ||||||| ||| || | | ||||| || || || ||||| ||||| ||||| || Sbjct 10803 ACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAAC 10862 Query 183069 CGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTT 183128 ||||||||||||||||| || || ||||| ||| || || | ||| | || |||||| Sbjct 10863 CGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTT 10922 Query 183129 ATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCT 183188 ||||||||||| || || | ||| | ||| ||| ||||| || | || | || Sbjct 10923 ATGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCA 10982 Query 183189 CTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAG 183248 | ||| | | |||||||| ||||| ||| || ||||||| ||||| |||||||| Sbjct 10983 TTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAA 11042 Query 183249 TTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCA 183308 || || || ||||| || || || || || | || ||||| | ||||| ||| |||| Sbjct 11043 TTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCT 11102 Query 183309 CCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAAC 183368 | ||||| || ||||||||||| || ||||| || || ||||| || | || ||| Sbjct 11103 GCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 11162 Query 183369 GCACT 183373 || || Sbjct 11163 GCCCT 11167 >seq181 Length=69431 Score = 104 bits (114), Expect = 3e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 179488 GACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGTTCA 179547 |||||||| ||||| ||| || ||| | || ||||| | |||||||| || || Sbjct 20317 GACGCTGCAGAAGAGCAAGGGGTTGATCTTCCGTATTCTTGCAGAGCTGGTGCGTGCTCT 20376 Query 179548 TCTTGTGCTGGTAAATTAG-AGAGTGGATCTGTTGATCAAAGCGATCAATCGTTTTTGGA 179606 |||| ||||||||| || ||| | | | |||||||| || ||||| ||||| || Sbjct 20377 ACTTGCGCTGGTAAAGTATCAGAAGGTA-CGATTGATCAATCTGACCAATCATTTTTAGA 20435 Query 179607 TGACGATCAAA-TGGAGTCGGGATTTATTCTGACTTGCGTATCTTATCCTACTAGTGATT 179665 ||||||||||| ||| | | |||||| || | ||||||||| |||||||||| |||| Sbjct 20436 TGACGATCAAACTGGTG-CTGGATTTGTTTTAACTTGCGTAGCTTATCCTACATCAGATT 20494 Query 179666 GCGTAGTCTTGACTGAACAGGAAGAGAG 179693 || | | || || | || ||||| || Sbjct 20495 GCACAATATTAACCCATCAAGAAGAAAG 20522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614594444281920