Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq250 691 0.0 seq316 468 7e-127 >seq250 Length=47047 Score = 691 bits (766), Expect = 0.0 Identities = 785/1050 (75%), Gaps = 2/1050 (0%) Strand=Plus/Plus Query 174445 AAGGCGCATCTATCTGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTT 174504 || ||||| | | ||||| | || || || ||||| ||| || | || ||| | | Sbjct 1217 AAAGCGCAAGTTTATGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTAT 1276 Query 174505 ACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTC 174563 | |||||||||| ||||| |||||||||||||||| ||| | || ||| | ||| ||| Sbjct 1277 ATATCGGTTGGTTTGGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTC 1335 Query 174564 ATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCT 174623 || || || ||||| | |||||| ||||| || || || || |||||||||||||| ||| Sbjct 1336 ATCATTGCATTCGTTGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCT 1395 Query 174624 GGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCA 174683 ||||| | | || || |||||||| ||||||||||| ||| |||| ||||| || Sbjct 1396 GGTTCTTTACTATACGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCT 1455 Query 174684 ATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAAC 174743 || ||| | |||||||||||||| |||||||| || | | ||||| ||| | |||||| Sbjct 1456 ATTGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAAC 1515 Query 174744 GGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGA 174803 ||||| | || ||| | || || ||||| | | ||| | ||| ||||| Sbjct 1516 GGTGGGTGCTACCCTCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGT 1575 Query 174804 CGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCT 174863 |||||||||||||| || |||||||||||| | ||||||||| ||| |||| |||| Sbjct 1576 CGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCT 1635 Query 174864 GCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTC 174923 || ||||||||||| || | || |||||| | |||| || | |||||||| ||| Sbjct 1636 GCTCCAGTTGCAGCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTC 1695 Query 174924 TCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCA 174983 || || | ||||| || ||||| ||||| |||||||||| |||| | || |||||||| Sbjct 1696 TCTGATGGTATGCCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCT 1755 Query 174984 GAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGT 175043 || |||||||| | |||||||| |||||| || || || || ||||| || ||||| Sbjct 1756 GAGCATAACATTCTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGA 1815 Query 175044 TCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACT 175103 || | ||| || ||||| |||||||| || || ||| | ||||||| |||||| Sbjct 1816 TCTCTATTCAGTGCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACT 1875 Query 175104 GAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATC 175163 |||| ||| || |||||||||||||||||||| ||||||||||| || |||||||| Sbjct 1876 GAAAATGAATCTGCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATT 1935 Query 175164 GTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCA 175223 || || || ||||| ||||| |||||||| || |||||||| ||| ||||||||||| Sbjct 1936 GTTGCTGCACATGGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCT 1995 Query 175224 CGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTT 175283 || ||||| ||||||||||||| |||||||||||| ||||| ||||| || | | Sbjct 1996 CGTTCACTTCACTTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATC 2055 Query 175284 GGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGAC 175343 ||| || || ||||| || ||| | |||||||||||||||||||| ||||| | ||| Sbjct 2056 TCTGTATCAACTATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGAC 2115 Query 175344 GGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATG 175403 | |||||| | ||| | ||||| ||||| ||| | ||||| | ||| | || ||| Sbjct 2116 AGCCAAGGTCGTGTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATG 2175 Query 175404 GAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGCAGCTGAGTCC 175463 ||||| ||||||||| | || || |||||||||||| |||| || || | | ||| || Sbjct 2176 GAAGTTATGCATGAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCT 2235 Query 175464 ACACCAGTGGCTCTAATTGCACCATCTGTT 175493 ||| || || ||| || ||| ||||| Sbjct 2236 CTACCTGTTGCATTAACAGCTCCAGCTGTT 2265 >seq316 Length=14323 Score = 468 bits (518), Expect = 7e-127 Identities = 725/1025 (71%), Gaps = 18/1025 (2%) Strand=Plus/Plus Query 175845 GGGTGGTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGG 175904 || |||| |||| || | || |||||| | ||||| | ||| | || || || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 175905 TCTGGATTACTACTTCTTCCCACTGCT--TATCTTGCCATTGGCGGCTGGCTTACTGGCA 175962 ||||| ||| | || || || |||| ||||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 175963 CAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTA 176022 | |||||||| || |||||| || |||||| | || ||| || | || ||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 176023 ACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 176082 |||| | ||||| || || || ||||| ||| || |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 176083 TT-TGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGG 176141 || ||||| || ||| |||| ||||| ||| | ||| || | || || |||||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 176142 TCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTT-CGTCAGTTTGA 176200 | ||| | ||| | || || || || | || || || || || || ||||||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTT-TGTTTACGTCAGTTTGA 10504 Query 176201 ACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGC 176260 | |||||||| | ||| | | || || ||||||||||| || || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 176261 TGTATT--TGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCC 176318 ||| || | ||||| | ||| | ||| || |||| ||| || ||||| ||||| Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTAT--CCTTTAGGCCAAGCTAGTTGGTTTTTTGCT 10622 Query 176319 CCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAAC 176378 || |||||||| || || ||||||||||| |||| || | |||||||| || ||| Sbjct 10623 CCTAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAAC 10682 Query 176379 TGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTA 176438 ||||| | || || |||||||||||||| || |||||||| || ||||| || || || Sbjct 10683 TGGACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTA 10742 Query 176439 TCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAAC 176498 | ||| |||||||| | |||||||||||||||| ||| ||||||||| || || Sbjct 10743 TGTGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGAC 10802 Query 176499 ACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAAC 176558 || || | || || | | || || ||||| || ||||| ||||| || || ||| Sbjct 10803 ACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAAC 10862 Query 176559 CGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTT 176618 || || ||||| ||||| || || ||||| ||| ||| || | ||||| || |||||| Sbjct 10863 CGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTT 10922 Query 176619 ATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGT---ATTGGCATCATTGGGCTT 176675 ||||||||||| || || | ||| | ||| ||||| |||||||| | || | Sbjct 10923 ATGTTGTTTGTACCAGTTACTGGTTTGTGG---ACAAGTTCAATTGGCATTGTAGGATTA 10979 Query 176676 GCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCT 176735 || | ||| | | |||||||| ||||| || || ||||||| ||||| |||||| Sbjct 10980 GCATTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCT 11039 Query 176736 GAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATG 176795 || |||||||| ||||| || || || || || | |||||||| | | ||||||||| Sbjct 11040 GAATTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATG 11099 Query 176796 GCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGT 176855 || | ||||| || ||||| ||| |||||||||| || ||||| || | || Sbjct 11100 GCTGCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGA 11159 Query 176856 AACGC 176860 ||||| Sbjct 11160 AACGC 11164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729902099902320