Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq250 677 0.0 seq316 484 8e-132 >seq250 Length=47047 Score = 677 bits (750), Expect = 0.0 Identities = 776/1037 (75%), Gaps = 6/1037 (1%) Strand=Plus/Plus Query 177840 TGGGAATCATTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 177899 |||||| |||||| ||||| || || | ||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 177900 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGT 177958 || ||| | |||||||| || | || |||| ||| ||||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 177959 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 178018 |||||||| || || || || || || ||||||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 178019 TGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTT 178078 || |||||||| ||||||||||| ||| ||||| ||| || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 178079 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 178138 ||| || || |||||||| || || | || |||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 178139 ACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGTGAGTGGGAA 178196 || | ||||| ||||| | | ||| | || ||| |||||||| |||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGC-TACATGGGTCGTGAGTGGGAA 1587 Query 178197 CTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCA 178256 ||| ||||||||||||||||| || |||||| ||| |||| |||||||||||| ||| Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 178257 GCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATG 178316 || ||| | || |||||| || |||| || | |||||||| || ||||| | ||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 178317 CCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATT 178376 || | || || |||||||||||||||| |||| |||| |||||||| || || |||||| Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 178377 CTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGT 178436 || |||||||| |||||| || ||||| || |||||||| ||||| || || |||||| Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 178437 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCA 178496 || ||||||||||| | || || ||| | | |||||||| ||||||| ||||| Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 178497 CAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 178556 ||||||||||| |||||||| ||||||||||| || || ||||| ||||| |||||| Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 178557 GGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCAC 178616 || ||||| |||||||| || |||||||||||| ||||||||||| |||||||| ||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 178617 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 178676 |||||| | | |||||| || || || || ||||| || | | ||| || Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 178677 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGT 178736 ||||| |||||| | ||||| |||||||||||||| || | | ||| | ||||| ||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 178737 GTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCAC 178796 || | ||||| ||||| || | | |||||||| | || |||||||| ||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 178797 GAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGAGTCCACACCTGTGGCC 178856 ||||| ||||| ||||||||||| | || | || | | ||| || |||||| || Sbjct 2188 GAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 Query 178857 TTAATTGCTCCTTCTGT 178873 |||| ||||| |||| Sbjct 2248 TTAACAGCTCCAGCTGT 2264 >seq316 Length=14323 Score = 484 bits (536), Expect = 8e-132 Identities = 726/1022 (71%), Gaps = 12/1022 (1%) Strand=Plus/Plus Query 179217 GGGTGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGG 179276 || ||||| ||| | | || |||||| | || | || || ||||| || | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 179277 TCTGGACTCCTACTTCTTCCCACTGCT--TATCTTGCCATTGGCGGTTGGCTTACTGGGA 179334 ||||| | | || || || |||| ||||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 179335 CAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTA 179394 | ||||||| || |||||| || || ||| | || ||||| || | || ||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 179395 ACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 179454 |||| | || || || || || || || ||| || |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 179455 TT-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGG 179513 || ||||| || || |||| || ||||| | ||||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 179514 AATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTA-GGCAATTTGA 179572 | ||| | ||| | || || || || | || || ||||| || ||| | || ||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 179573 ACTTGCTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGC 179632 |||| | || | ||| | |||||||| || || ||||||||||| || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 179633 TGTATTCG--TCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCG 179690 ||| |||| ||||| |||| | || |||||||| || || | ||||||||| || Sbjct 10565 TGTGTTCGTATCAGTATTTT--TAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCT 10622 Query 179691 CCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAAC 179750 || |||||||| || || ||||| || || || | ||| | |||||||| || ||| Sbjct 10623 CCTAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAAC 10682 Query 179751 TGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTC 179810 |||||| | || || |||||||||||||| || |||||||| || || || || | | Sbjct 10683 TGGACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTA 10742 Query 179811 AGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAAT 179870 ||||||||||||| | |||||| || ||||| || | ||||||||| || || | Sbjct 10743 TGTGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGAC 10802 Query 179871 ACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAAC 179930 || |||| || ||| | | || || ||||| || ||||| ||||| || |||||| Sbjct 10803 ACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAAC 10862 Query 179931 CGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTC 179990 || || ||||| || || || ||| |||| ||||||||||| | ||||| ||||| || Sbjct 10863 CGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTT 10922 Query 179991 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCT 180050 ||||||||||| || |||| ||| | |||||| || ||||||||| | || | || Sbjct 10923 ATGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCA 10982 Query 180051 CTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAG 180110 | || | | ||||| || || ||| |||||| | ||||| ||||| ||||| || Sbjct 10983 TTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAA 11042 Query 180111 TTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCA 180170 ||||| || ||||| || || || ||||| | || ||||| | ||||||||| |||| Sbjct 11043 TTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCT 11102 Query 180171 CCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAAT 180230 || ||||| || ||||| || |||||||||| || ||||||||| | || || Sbjct 11103 GCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 11162 Query 180231 GC 180232 || Sbjct 11163 GC 11164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605986768588320