Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq250 670 0.0 seq316 493 1e-134 seq181 109 6e-19 >seq250 Length=47047 Score = 670 bits (742), Expect = 0.0 Identities = 771/1031 (75%), Gaps = 6/1031 (1%) Strand=Plus/Plus Query 158370 TGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 158429 |||||| ||||||| ||||| || || | ||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 158430 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGT 158488 || ||| | |||||||| || | || |||| || ||||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 158489 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 158548 |||||||| || || || || || || ||||||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 158549 TGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTT 158608 ||||||||||| ||||||||||| ||| | ||| ||| || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 158609 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 158668 ||| || || |||||||| || || | || |||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 158669 ACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTGAATGGGAA 158726 || | || || ||||| | | || | || ||| || ||||| ||||| |||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGC-TACATGGGTCGTGAGTGGGAA 1587 Query 158727 CTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCT 158786 ||| ||||| ||||||||||| || |||||| ||| |||| ||||| ||||| || Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 158787 GCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATG 158846 || ||| ||||||||||| | |||| || | |||||||| ||||| |||| |||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 158847 CCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATC 158906 ||| | ||||| |||||||| || |||| |||| ||||||||||||| || || ||||| Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 158907 CTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCT 158966 || |||||||| ||||| | ||||||||||| ||||| ||||||||||| ||| | Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 158967 GCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCA 159026 |||||||| || || || ||||| | | |||||||| ||||||| || || Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 159027 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCAT 159086 |||||||||||||||||||| |||||||||||||| ||||| || || || || ||| Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 159087 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 159146 |||||||| |||||||| || |||||||| ||| ||||||||||| ||||| | ||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 159147 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC 159206 |||||| | | | |||||| ||||| || || ||||| || | | || ||||| Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 159207 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 159266 ||||| || ||| | || ||||||||||||||||| || | |||| | || |||||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 159267 GTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCAT 159326 || | ||||| ||||| ||| | | |||||||| | |||||||||||||||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 159327 GAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCAACTCCTGTTGCA 159386 ||||||||||| |||||||||||| | ||| | || ||| ||| || ||||||||| Sbjct 2188 GAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 Query 159387 CTTTCAGCACC 159397 | |||| || Sbjct 2248 TTAACAGCTCC 2258 >seq316 Length=14323 Score = 493 bits (546), Expect = 1e-134 Identities = 732/1031 (71%), Gaps = 10/1031 (1%) Strand=Plus/Plus Query 159893 GGGTGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 159952 || |||||||| | | || |||||| | || | || ||||| ||||| | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 159953 TCTGGACTTCTTCTTCTTCCCACTGCT--TATCTTGCTATTGGCGGTTGGCTTACTGGAA 160010 ||||| | | || || || |||| |||||||| | || || |||||||| |||| Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 160011 CAACTTTCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAA 160070 | ||||| | ||| |||||||| ||||| | || ||||| || | || ||| | Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 160071 ACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTC 160130 |||| | ||||| ||||| ||||||||| | |||||| || ||| || || ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 160131 TC-TGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 160189 | ||||| || || |||||||| |||||| || ||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 160190 AATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAA 160249 | |||| | || | ||||| || || | ||||| || || | ||||||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTTTGTTTACGTCAGTTTGAG 10505 Query 160250 CTGGCACGTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 160309 | ||| | || | ||| | | ||||| || |||||||| || || || ||||| || Sbjct 10506 ATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCT 10565 Query 160310 GTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCG 160369 || || || ||||| | || || || || || || | ||||||||||| ||||| Sbjct 10566 GTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCT 10625 Query 160370 TCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGG 160429 ||||| || || || ||||||||||| | || ||| | || || ||||| |||||| Sbjct 10626 AGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGG 10685 Query 160430 ACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGT 160489 ||| | || || |||||||||||||| || |||||||| || || || || | | || Sbjct 10686 ACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGT 10745 Query 160490 GCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACC 160549 || |||||||| | |||||| || || || | | ||||||||| || || | || Sbjct 10746 GCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACA 10805 Query 160550 TTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGC 160609 |||| || ||| | | || || ||||| || ||||| ||||| || |||||||| Sbjct 10806 TTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 160610 TTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATG 160669 || ||||| || || || ||| |||| ||||||||||| | ||||| ||||| || ||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 160670 TTGTTTGTGCCTGTTATGGGTCTTTGGACA--TCCAGTATTGGCATTATTGGTCTTGCTC 160727 |||||||| || |||| ||| | |||||| | || ||||||||| | || | || Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCA--ATTGGCATTGTAGGATTAGCAT 10983 Query 160728 TCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAAT 160787 | ||| | | ||||| || || || ||| || ||||||| ||||| ||||| |||| Sbjct 10984 TAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAAT 11043 Query 160788 TTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCAC 160847 |||| || ||||| || || || || ||| |||| ||||| | ||||||||| | || Sbjct 11044 TTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTG 11103 Query 160848 CTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACG 160907 | || || || ||||| |||||||| |||||||| || ||||| || | || |||| Sbjct 11104 CACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACG 11163 Query 160908 CCCTTTAATAA 160918 ||||||||||| Sbjct 11164 CCCTTTAATAA 11174 >seq181 Length=69431 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 159530 TTGTGAAGCGGACCAATACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTA 159589 ||||| || ||| |||||||||||||||||| || || ||| || ||| |||||| Sbjct 20292 TTGTGCAGATGACGTATACATTTTAGACGCTGCAGAAGAGCAAGGGGTTGATCTTCCGTA 20351 Query 159590 TTCATGTCGTGCTGGTGCTTGTAGCACATGTGCTGGT-AAGATTGAGAGCGGGACAGTTG 159648 ||| || | |||||||| || || || |||||| ||| | ||| || || ||| Sbjct 20352 TTCTTGCAGAGCTGGTGCGTGCTCTACTTGCGCTGGTAAAGTATCAGA-AGGTACGATTG 20410 Query 159649 ACCAAAGTGACCAATCTTTCTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTT 159708 | ||| ||||||||| || || || || |||||| | || |||||| || | |||| Sbjct 20411 ATCAATCTGACCAATCATTTTTAGATGACGATCAAACTGGTGCTGGATTTGTTTTAACTT 20470 Query 159709 GTGTCTCCTACCCTACATCAGACGTAACTATCTTAACCGAACAGGAGGA 159757 | || | || ||||||||||| || || |||||| | || || || Sbjct 20471 GCGTAGCTTATCCTACATCAGATTGCACAATATTAACCCATCAAGAAGA 20519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552452785557120