Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq250 728 0.0 seq316 486 2e-132 seq181 87.8 2e-12 >seq250 Length=47047 Score = 728 bits (806), Expect = 0.0 Identities = 776/1019 (76%), Gaps = 4/1019 (0%) Strand=Plus/Plus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 ||||||| |||||| ||||| || ||| | || ||||| ||| | |||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGT 178970 ||||| | ||||||||||| || | | || ||| ||||| |||||| |||| ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 178971 AGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179030 || || ||||| || |||||||| || ||||||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 179031 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTT 179090 || |||||||| ||||||||||||||| | |||||||| || |||||| | ||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 179091 CTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 179150 |||||| || |||||||| || || | || |||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 179151 ACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACT 179210 || | || || ||||| | | || | | ||| ||||| |||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 179211 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGC 179270 | |||||| ||||||||||||| |||||| |||||||| |||||| ||||| || || Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 179271 TGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCC 179330 ||| | ||| |||||| | |||| || | |||||||| |||||||||| |||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 179331 TCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCT 179390 | | ||||| |||||||| || |||| |||| ||||||||||||| || || ||||| || Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 179391 TATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGC 179450 |||||||| ||||| | ||||||||||| ||||| ||||||||||| ||| ||| Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 179451 TATGCACGGAAGTCTCGTTACTTCCTCGCTT-GTTCGTGAAACAACTGAGACAGAGTCAC 179509 ||||||||| || || |||| || | || | |||||||||||||| | || || Sbjct 1830 TATGCACGGTTCACTAGTAACTT-CTAGTTTAATCCGTGAAACAACTGAAAATGAATCTG 1888 Query 179510 AGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATG 179569 ||||||||||| |||||||| ||||||||||| || |||||||| || || ||||||| Sbjct 1889 CTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATG 1948 Query 179570 GCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACT 179629 | ||||| |||||||| || ||||||||||| || |||||||| || || | |||| Sbjct 1949 GTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACT 2008 Query 179630 TCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCA 179689 ||||| | | | ||||| ||||| || || ||||| || || | || ||||| | Sbjct 2009 TCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTA 2068 Query 179690 TGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTG 179749 ||||||| ||| | || ||||||||||||||||| || | ||||| | ||||| |||| Sbjct 2069 TGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTG 2128 Query 179750 TCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATG 179809 | ||||||| ||||| || | | |||||||| || ||||||||||||||||||| Sbjct 2129 TAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATG 2188 Query 179810 AGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACACCTGTAGCA 179868 |||||||||| |||||||||||| | ||| | || ||| ||| ||| |||||| ||| Sbjct 2189 AGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 >seq316 Length=14323 Score = 486 bits (538), Expect = 2e-132 Identities = 722/1019 (71%), Gaps = 6/1019 (1%) Strand=Plus/Plus Query 180015 GGGTGGTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGG 180074 || ||||| ||| | | || |||||| | || | ||||| ||||| || | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 180075 TCTGGACTACTACTTCTTCCCACTGCT--TATCTTGCCATTGGCGGTTGGCTTACTGGCA 180132 ||||| || | || || || |||| ||||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 180133 CAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTA 180192 | ||||||| || |||||| || || ||| | || ||| || | |||||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 180193 ACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTAC 180252 |||| | || || || || || || || ||| | |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 180253 TT-TGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGG 180311 || ||||| || || |||| || ||||| | | ||||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 180312 AATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAA 180371 | ||| | ||| | || || || || | ||||| || ||| |||| |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTTTGTTTACGTCAGTTTGAG 10505 Query 180372 CTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCT 180431 | ||| | ||| | ||| | | ||||| || |||||||| || || || ||||| || Sbjct 10506 ATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCT 10565 Query 180432 GTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCC 180491 || || || |||||| | || || || | || || | |||||||| |||||||| Sbjct 10566 GTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCT 10625 Query 180492 TCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGG 180551 |||||| || || || ||||||||||| || | || | |||||||| || |||||| Sbjct 10626 AGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGG 10685 Query 180552 ACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCA 180611 || | || || |||||||||||||| || |||||||| || ||||| || || ||| Sbjct 10686 ACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGT 10745 Query 180612 GCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACC 180671 || |||||||| | ||||| || || || | | ||||||||| || || |||| Sbjct 10746 GCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACA 10805 Query 180672 TTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGC 180731 |||| || ||| | |||| ||| || ||||| || || ||||| || |||||||| Sbjct 10806 TTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 180732 TTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATG 180791 || ||||| || || || ||| |||| ||||||||||| | ||||| ||||| || ||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 180792 TTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTC 180851 |||||||| || |||| ||| | |||||| || ||||||||| | || | || | Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTA 10985 Query 180852 AACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTC 180911 || | | ||||| || || || ||| || | ||||| ||||| |||||||| || Sbjct 10986 AATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTT 11045 Query 180912 GAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCT 180971 || || ||||| || || || || |||||||| ||||| | ||||||||| |||| | Sbjct 11046 GAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCA 11105 Query 180972 GCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 ||||| || || |||||||| || ||||| || || ||||| ||| | || ||||| Sbjct 11106 CAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGC 11164 >seq181 Length=69431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 177374 TTGTGAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTA 177433 ||||| ||| || ||||| | ||||| || ||||| ||| |||||| || || Sbjct 20292 TTGTGCAGATGACGTATACATTTTAGACGCTGCAGAAGAGCAAGGGGTTGATCTTCCGTA 20351 Query 177434 CTCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACT-TGAGAGTGGTAGTGTAG 177492 || ||| | |||||||| || || | || ||||||||| | | ||| |||| | | Sbjct 20352 TTCTTGCAGAGCTGGTGCGTGCTCTACTTGCGCTGGTAAAGTATCAGAA-GGTACGATTG 20410 Query 177493 ATCAAAGCGATCAATCGTTCTTGGATGACGATCAAA-TGGAGTCAGGATTTATTCTGACC 177551 ||||| || ||||| || || ||||||||||||| ||| | | |||||| || | || Sbjct 20411 ATCAATCTGACCAATCATTTTTAGATGACGATCAAACTGGTG-CTGGATTTGTTTTAACT 20469 Query 177552 TGTGTGTCATATCCCACCAGCGATTGTGTAGTCTTGACCGATCAGGAAGAGAGTCTTTAC 177611 || || | ||||| || ||||| | | || ||| |||| ||||| || | ||| Sbjct 20470 TGCGTAGCTTATCCTACATCAGATTGCACAATATTAACCCATCAAGAAGAAAGCTTATAC 20529 Query 177612 TGAT 177615 | || Sbjct 20530 TAAT 20533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610306605832320