Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq963 122 1e-22 >seq963 Length=27641 Score = 122 bits (134), Expect = 1e-22 Identities = 242/353 (69%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||| || || || ||||| |||| ||| | || || || ||||| Sbjct 17246 GCACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAG 17305 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 ||||||||| || || ||||| ||||||||||| || || ||| ||||| || || || | Sbjct 17306 TCCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGC-GCAGAAAGAGCCGGAGAAAA 17364 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATG-T 39793 | || ||||| ||||| ||||| || || || | |||| | | || | ||| Sbjct 17365 AAATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGT-GCGATGAG 17423 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 |||||| || ||||| || || || ||||| || || || || ||| ||||| | Sbjct 17424 ATCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGG 17483 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 ||||||| | ||||| || || || || || || || | || ||| || Sbjct 17484 AAGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGAGTACGTT 17543 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 || || |||||||| || ||||| ||||| || || ||||| || | ||||| Sbjct 17544 TCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTC 17596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882920710960