Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq181 86.0 1e-11 >seq181 Length=69431 Score = 86.0 bits (94), Expect = 1e-11 Identities = 219/326 (67%), Gaps = 32/326 (10%) Strand=Plus/Minus Query 49175 TTTCATGTTTGTTGGACCATCTGGTACTGGTAAAACTGAAATCACAAAAGCACTTGCTGA 49234 |||||| ||| ||| ||| | ||| ||| ||||||||| | || ||||| | || Sbjct 37074 TTTCATATTTTCTGGTCCAACAGGTGTTGGCAAAACTGAATTGACTAAAGCTTTAGC--- 37018 Query 49235 AGCAA------TGGGTTCTGA----GCTA--ATTCGTTTTGATATGTCAGAGTTT-TCGC 49281 | || | |||||||| |||| |||||||| ||||||||||||| | | | Sbjct 37017 ATCATATTTTTTCGGTTCTGAAGAGGCTATGATTCGTTTAGATATGTCAGAGTATATGGA 36958 Query 49282 AAGACCACACTGTATCTAAACTTATTGGTTCACCTCCTGGATATGTAGGACATGAAACAG 49341 ||||| |||||||||| || |||| || |||||||| || ||||| | || |||| Sbjct 36957 AAGAC-ACACTGTATCCAAGATTATAGGATCACCTCCAGGTTATGTGG-----GATACAG 36904 Query 49342 GAAATGGTCAGCTTCT----TGATAAAGTTGAACAATTCCCTAATGCAGTACTTCTACTG 49397 || | | | || | ||| |||| | || ||| || |||| || || | Sbjct 36903 CGAA--GGCGGTTTTTTAACTGAAGCAGTTAGAAAACGTCCTTATACAGTCATTTTATTT 36846 Query 49398 GATGAAATTGAAAAAGCACATCCAAAAGTACTGCTGA--CATTCCTACAAGTATTGGATG 49455 |||||||| |||||||| || ||| | || | | | || |||||| | || || | Sbjct 36845 GATGAAATAGAAAAAGCGCACCCAGA--TATTTTTAATCTTTTACTACAAATTTTAGAAG 36788 Query 49456 AAGGGCGTTTGACTGGTTCACAAGGA 49481 | || || ||||||| | | ||||| Sbjct 36787 ATGGTCGCTTGACTGATGCTAAAGGA 36762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108952374070986