Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1059 93.3 1e-13 >seq1059 Length=17963 Score = 93.3 bits (102), Expect = 1e-13 Identities = 188/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 254813 TGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGA 254872 |||| || |||||||| | |||||| ||| ||||||||| || ||||| ||| Sbjct 16548 TGCTTTCTGCTGACCATGAAAGAAGACTCGATCGAAGGCATCTATGATACGCTGAAGCGC 16489 Query 254873 TGCGCATTCGTGAGT--CAATCGAGC-GGCGGCGTGGGACTCAACATCTCCAACGTGCGC 254929 ||||| |||| | ||| ||| |||||| | || ||| ||| || ||| | || Sbjct 16488 TGCGCG---GTGATTTCCAAGTCAGCCGGCGGCATCGGTCTCTCCATTTCGAACATCCGT 16432 Query 254930 GCCAGCGGCACACCGATTCGCTCGACGAACGGACGGAGCGGCGGCATTATACCAATGATC 254989 |||| | | ||||| || || || | ||||||| |||||||| | Sbjct 16431 GCCACCAAGAGCTACATTCGGGGCACAAATGGCTCGTCAAACGGCATTGTACCAATGCTG 16372 Query 254990 CGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCG 255049 || |||| ||| || || || ||||| ||||| || || || || ||| ||| ||| Sbjct 16371 CGAGTGTACAATGACACAGCGCGTTACGTGGATCAGGGCGGTGGTAAGCGCAAAGGTGCG 16312 Query 255050 TTCACCATCTACCTGGAGCCGTGGCACGCCGACATT 255085 || || |||| | ||||||||||||||||||||| Sbjct 16311 TTTGCCTGCTACATTGAGCCGTGGCACGCCGACATT 16276 Score = 84.2 bits (92), Expect = 7e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 256133 GAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAA 256192 |||||||| |||||||||||| | ||||||||||| || || ||| | || Sbjct 15396 GAGCACGGCTTGCGCAACTCGCTCTTGGTAGCGCCCATGCCGACTGCTTCCACGTCGCAG 15337 Query 256193 ATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTT 256252 || ||||||||| || || | ||||| || | ||| ||| | ||||||||||| Sbjct 15336 ATTCTGGGTAACAACGAGTGCTTTGAACCGTACACGTCAAACATCTACACGCGCCGCGTT 15277 Query 256253 CGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTG 256291 | | | |||||||||||||| || ||| || | ||| || Sbjct 15276 CTCGCGGGCGAGTTCGCCGTTGTTAACAAGCATTTGCTG 15238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588274663427230