Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1059 168 8e-37 seq216 98.7 1e-15 seq181 95.1 2e-14 seq2016 86.0 8e-12 >seq1059 Length=17963 Score = 168 bits (186), Expect = 8e-37 Identities = 556/859 (65%), Gaps = 13/859 (2%) Strand=Plus/Plus Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 || || || || ||||| ||||| || ||| ||| || |||||||||| | ||| Sbjct 15848 AGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTACTCAATGATT 15907 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 ||||| || || ||| || || || || | |||| ||||| ||| |||| Sbjct 15908 TCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGAGTTG 15967 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 ||||||||||| |||||||| || || || ||||| |||| || | || | || Sbjct 15968 GCGGCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCACCGCA 16027 Query 111413 TTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTG 111472 ||| | | | || || | | || || || || || |||||||| ||| Sbjct 16028 AACCACAGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCGTTTTCGTACTTGGTG 16087 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 || || || || || ||| |||| || |||| | || || || || | || || ||| Sbjct 16088 TACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGGCGCTTCGTTGGGGCAG 16147 Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 || || ||| || || | ||||| || ||||||||||| ||||| || ||||||| Sbjct 16148 AAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGC 16207 Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 | |||||||||| | || | |||||| | || ||||| || | || ||| Sbjct 16208 GCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGG 16267 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---A 111709 ||||| | || || |||||||| ||||||| ||| || | | || || || | Sbjct 16268 AACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTA 16327 Query 111710 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 111769 | || | |||| || || ||||||||| | || | || || |||||||| | ||| Sbjct 16328 CCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATG 16387 Query 111770 CCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGAT 111828 || | ||| |||||||| |||||||| || | || |||| | | | || Sbjct 16388 CCGTTTGACGAGCCATTTGTGCCCCGAAT-GTAGCTCTTGGTGGCACGGATGTTCGAAAT 16446 Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 111888 | | || || || || || |||| || || ||| || | | || || |||| Sbjct 16447 GGAGAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATA 16506 Query 111889 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948 ||| || | ||| ||||| || || ||| | || ||||| | | |||||| | Sbjct 16507 GATGCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCTGAGCTGCGGGCG 16566 Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTG----TTGCGTGAATGAACATACCTTGGGACA 112004 || || | |||||||| | || || | |||||||| |||| | ||| |||| Sbjct 16567 CGGCGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAA-GAACTT---TTGCGACA 16622 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 | | ||||| ||||| | || ||||| | | ||||||||| | ||| || | Sbjct 16623 ACATTTCGTACGTCTCGAGAACGCTCGGGATGTCGTGCATGTGGATGCCTACTGCCACGC 16682 Query 112065 GCATGAACATGTACTGTGG 112083 |||| | ||||| ||| || Sbjct 16683 GCATCAGCATGTGCTGCGG 16701 Score = 104 bits (114), Expect = 3e-17 Identities = 384/588 (65%), Gaps = 19/588 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 || ||||| ||||||||||| || |||||||| |||| | ||||| || || |||||| Sbjct 14951 TAATACATACCGGTCTTGAGGCCCAGTTTCCATCCGTAAAAGTGCATGGAGGACAGCTTG 15010 Query 110429 GACATCGTTGGACTTT-CCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA-GCGCC 110486 | |||||| |||| | |||| || |||||||| ||||| ||||| Sbjct 15011 C-CTGCGTTGGGGGCAGCCATATGCACATTCAAGCTCATGCTTTGGTCGATGAACGCGCC 15069 Query 110487 CCCGTTGTGCCGCCATAT-CAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 | || | |||||||| | ||| | || ||| | |||||||||||| || || Sbjct 15070 ACGGTCG-GCCGCCATCTTCAACAATGTC-TTCTGCGAAATTTCCCAAACGGTTTTGTAA 15127 Query 110546 AGATTCTTG-ATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCAC 110604 || ||| | | ||| | || || || | | | || | ||||| || | Sbjct 15128 AG-TTCACGCAGCTCAGCCGGAATCTCCGTCAGGCTTTGTACTGAACCATTG---TTTGC 15183 Query 110605 CATGAGATC---CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAG 110661 |||| | |||| | | ||| ||| || |||| ||| || ||| | | | Sbjct 15184 GATGATCTTGTTCTTCGTCGCATTGTTCCAAAGGCCAAGACTCTGCAGATCACTCAGCAA 15243 Query 110662 GTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGT 110721 |||||||| |||| | | ||||| || ||||| | | | ||||||||||| || Sbjct 15244 ATGCTTGTTAACAACGGCGAACTCGCCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGT 15303 Query 110722 GTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781 ||| ||||||||||| || || ||||||| || || | ||||| || || ||||| || Sbjct 15304 GTACGGTTCAAAGCACTCGTTGTTACCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGG 15363 Query 110782 TGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCA 110841 || | ||| || ||| || | || | ||| ||| || |||||| | |||| Sbjct 15364 CGCTACCAAGAGCGAGTTGCGCAAGCCGTGCTCAAGGATTTTTTGCTTGAGCGCTGCCCA 15423 Query 110842 GTCGTA----GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGG 110897 ||||| || || ||| | |||||| ||||||||||| |||| | Sbjct 15424 ATCGTATCGCCCGGACGCCGGCGTCA-CGCCCCACAAATCAAACTGAAGTTTGCCTTCTG 15482 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | |||||||| || |||| |||||||| ||||| || ||| |||| Sbjct 15483 ATGCGGGAGAGCCAGCAAATGTTTCATACGAACCGTGCTCTTGCGCCA 15530 >seq216 Length=49752 Score = 98.7 bits (108), Expect = 1e-15 Identities = 272/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 11449 GCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGC 11508 ||||||||| ||||| ||||| || | ||| || || | ||| ||| || || || Sbjct 1356 GCGATCAAATCGACCTGGGCGCAGCAACGCGCGGTCCAGCACATCGGAGCGGTTCGTTGC 1297 Query 11509 CGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 ||| || || | || || | | ||||| || |||||||| ||| | |||||| Sbjct 1296 CGCGATGACGATGATTCCGCTGTTCGCCTCAAACCCGTCCATCTCCACGAGCATTTGATT 1237 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCT--GGC-ATACCACCAGCACTGCGTTGCTTGCC 11625 | ||||| || | || |||||| | ||| ||||| || | ||| || || Sbjct 1236 CAGCGTTTGCTCACGTTCGTCATTTCCACCGGCGATACCG---GCTCCGCGCTGGCGTCC 1180 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTT-GATTTTC---GCGGGCGATTT 11681 ||||| || || || |||||||| | || || ||| | ||||| ||| ||| Sbjct 1179 GACCGCGTCGATTTCGTCAATGAAAATGATGCAAGGTGCGTTTTTCTTTGCGTTCGAG-- 1122 Query 11682 CAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGG 11741 || ||||| || || | || |||||||| ||||||||||||||||| | | | Sbjct 1121 --AAAAGATCACGCACACGCGAAGCGCCCACACCCACAAACATCTCCACAAACTCGGAGC 1064 Query 11742 CAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801 | | | || ||| ||||| | ||||| || | ||| || || || ||||||| Sbjct 1063 CTGCAATCGAGAAGAAGGGGACGCCGGCCTCACCGGCCACGGCGCGCGCAAGCAGGGTCT 1004 Query 11802 TTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | ||||| ||||| ||| | |||| | || || ||||| ||||| || Sbjct 1003 TACCCGTTCCTGGAGGACCTTCCAGAATCACACCACGCGGGATTTTGGCGCC 952 >seq181 Length=69431 Score = 95.1 bits (104), Expect = 2e-14 Identities = 174/251 (69%), Gaps = 12/251 (5%) Strand=Plus/Plus Query 11489 ATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCC 11548 ||||| | | |||||| || |||||||| | || ||||| | ||||| |||||| Sbjct 14216 ATATCTGCCCTATTAGTCGCTGCAATAACAATAACACCAGTATTTCCCTCAAATCCATCC 14275 Query 11549 ATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCA--TACCAC 11606 || || || | | |||||| | ||||| |||||||||||| || | | || || || Sbjct 14276 ATTTCTGTCAACATTTGATTCAAAGTTTGCTCTCTCTCATCA-TTACCGCCACCTA-TAC 14333 Query 11607 CAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGAT 11666 | | || ||||| || || |||||||| |||||||| || ||||| || ||| || Sbjct 14334 CTGTACCACGTTGGCGCCCAACAGCATCAATTTCATCAATAAATACAATGCAAGGTGCAT 14393 Query 11667 ----TTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || || | ||| | ||| || || || ||||| || ||||||||| Sbjct 14394 TAGCTTTTGCTTGC----TTAAATAAATCACGTACTCTAGAAGCACCTACGCCAACAAAC 14449 Query 11723 ATCTCCACAAA 11733 || || ||||| Sbjct 14450 ATTTCAACAAA 14460 >seq2016 Length=8234 Score = 86.0 bits (94), Expect = 8e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 182697 TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACC 182756 || |||||||| |||||||| || |||| ||| ||||| | ||| || || || | || | Sbjct 4501 TTGCCGCGAAGCGGGAACACGCCATAGTAATCGCGACCGATGACCGAAAGGCCTGAAATC 4442 Query 182757 GCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCC 182816 ||||| | ||| || || ||||||||||| | ||| | ||| ||||| | || | Sbjct 4441 GCGAGCGCTTTGGCAGAGTCACCCTCCGTCAGAATCAAAGTGCACTTGCAGGACTCGCGA 4382 Query 182817 GTACCCGCCTTGTTCGCGTCATCCA 182841 | || |||||||| || || |||| Sbjct 4381 GAGCCGGCCTTGTTTGCATCGTCCA 4357 Score = 82.4 bits (90), Expect = 1e-10 Identities = 183/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862 ||||||||||| || || || || || ||||||||| | ||| |||| | ||||||| Sbjct 5407 GCGTCTTTACCTCCTTGCAGCCGGGTTCCGAATTGACCAGACGGCACAAGCAAGTTAATG 5348 Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCA 181922 ||||| | ||| | ||| | || | | ||||| || | || || | || Sbjct 5347 TTGTTGGCACCGACAAAGTTCTGCGCAAGCCCGACGATCGTCGACATGAGTGAAGCCTCG 5288 Query 181923 CCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCA 181982 ||||| || ||||| | | |||| ||||| | || | ||| |||||||| |||||| Sbjct 5287 CCGTGATGATAAGCCGCATGCTCCGACACATAACCGGCGAGCTGCGCCACCTTAATTTCA 5228 Query 181983 TCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCA 182042 ||||| || | | |||||| || | | ||| || | ||| ||||| || ||| Sbjct 5227 GTCTTGAGTTTTCTCTTGAAGCACGCGAAGAGCACCTTGCGCTGGCTGGGCTTTAGCCCA 5168 Query 182043 TCCGCCATATGGGCAATAGAGCGCTTGAGGTCTGC 182077 || | | | ||| ||||||| | |||||| Sbjct 5167 TCGACAACGCTAGGAATGGAGCGCTCGTTGTCTGC 5133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628008338894400