Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq216 163 4e-35 seq1059 141 1e-28 seq963 98.7 1e-15 seq2016 87.8 2e-12 >seq216 Length=49752 Score = 163 bits (180), Expect = 4e-35 Identities = 289/412 (70%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 |||||||| ||||||||||| || | ||| ||| || | ||| ||||||||| ||| Sbjct 1355 CGATCAAATCGACCTGGGCGCAGCAACGCGCGGTCCAGCACATCGGAGCGGTTCGTTGCC 1296 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAG---TTGA 14179 |||||||| | ||| || | | ||||| || |||||||| || ||| |||| Sbjct 1295 GCGATGACGATGATTCCGCTGTTCGCCTCAAACCCGTCCATCTC---CACGAGCATTTGA 1239 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTCGCA--GGC-ATACCACCCGCACTGCGTTGCTTA 14236 || | ||||| || ||||| ||||| || ||| ||||| || | ||| || Sbjct 1238 TTCAGCGTTTGCTCACGTTCGTCATTTCCACCGGCGATACCG---GCTCCGCGCTGGCGT 1182 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTT-GATTTTCACGGGCAACTTC 14295 ||||| ||||| ||||| || ||||||| ||| || ||| | ||||| | | Sbjct 1181 CCGACCGCGTCGATTTCGTCAATGAAAATGATGCAAGGTGCGTTTTTCTTTGCGTTCGAG 1122 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 ||| | ||| ||||| | | || || ||||||||||||||||||||||| | || | | Sbjct 1121 AAA-AGATCACGCACACGCGAAGCGCCCACACCCACAAACATCTCCACAAACTCGGAGCC 1063 Query 14356 GGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 | | || | || |||||||||| | ||||| || | ||| || || || ||||||| Sbjct 1062 TGCA-ATCGAGAAGAAGGGGACGCCGGCCTCACCGGCCACGGCGCGCGCAAGCAGGGTCT 1004 Query 14415 TCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 | ||||| ||||| ||| | |||| ||||||| ||||| |||| || Sbjct 1003 TACCCGTTCCTGGAGGACCTTCCAGAATCACACCACGCGGGATTTTGGCGCC 952 >seq1059 Length=17963 Score = 141 bits (156), Expect = 1e-28 Identities = 382/584 (65%), Gaps = 3/584 (1%) Strand=Plus/Plus Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 |||||| || || || || || ||||||| || ||||| | ||| || | Sbjct 15833 TTGACAAACATATTCAGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCT 15892 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||||| || ||||| |||||||| || || || ||||| | ||||| || Sbjct 15893 GTGTACTCAATGATTTCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGG 15952 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||||||| ||| ||||||||||| |||||||| || || || ||||| | || Sbjct 15953 TTCGACTTTGAGTTGGCGGCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGC 16012 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCT 118931 || | || | || ||| | | | || || | || || || || || || Sbjct 16013 GAGTCAAGCACCGCAAACCACAGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCG 16072 Query 118932 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 118991 | |||||||| ||||| || || || || || |||| | || | || || || Sbjct 16073 TTTTCGTACTTGGTGTACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGGC 16132 Query 118992 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 119051 || | | ||||||||||| ||| || || ||||||| || ||||||||||| ||| Sbjct 16133 GCTTCGTTGGGGCAGAAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGG 16192 Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111 || || |||| ||||| | |||||||| || || | ||||| | || || || Sbjct 16193 TCCGGCGTCCACAGCGCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTC 16252 Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171 |||| || | || || | || || ||||||||||| || | ||| || | Sbjct 16253 TTGCGCAGGTCGAGGAACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAAC 16312 Query 119172 GACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGA 119228 | || || || || ||| |||| | || || | ||| ||| | || | || || Sbjct 16313 GCACCTTTGCGCTTACCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGC 16372 Query 119229 AGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT 119272 |||||||| | || || | || ||||||||| |||||||| Sbjct 16373 AGCATTGGTACAATGCCGTTTGACGAGCCATTTGTGCCCCGAAT 16416 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 118136 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 118195 |||||| || ||||| | ||||| |||||||| ||| | | ||||| || | ||| Sbjct 15244 ATGCTTGTTAACAACGGCGAACTCGCCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGT 15303 Query 118196 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 118255 ||| || ||||||||||| |||||||||| || || | ||||| || || |||||||| Sbjct 15304 GTACGGTTCAAAGCACTCGTTGTTACCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGG 15363 Query 118256 TGC 118258 || Sbjct 15364 CGC 15366 >seq963 Length=27641 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||||||||| || || || || ||||| ||| || || Sbjct 17250 GCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGTCCA 17309 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | ||| || || || || || ||||| ||||| || || Sbjct 17310 GGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAAATT 17369 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAA 130194 || || || || ||||| | |||||||| |||||||| ||| | | || | Sbjct 17370 CCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGTG-CGATG---AGAT 17425 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCT 130223 |||| ||| ||||||| |||||||||| Sbjct 17426 CCACGTCAAAGCCCACTCGGCCTTTTTCT 17454 >seq2016 Length=8234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 179062 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 179121 || ||||| || || || || || || ||||||||| | ||| |||| | || || Sbjct 5407 GCGTCTTTACCTCCTTGCAGCCGGGTTCCGAATTGACCAGACGGCACAAGCAAGTTAATG 5348 Query 179122 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 179181 ||||| | ||| | ||| | || | | ||| ||||| | ||| || | || Sbjct 5347 TTGTTGGCACCGACAAAGTTCTGCGCAAGCCCGACGATCGTCGACATGAGTGAAGCCTCG 5288 Query 179182 CCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCA 179241 |||||||| ||||||| | |||| |||||| | || | |||||||||||| || ||| Sbjct 5287 CCGTGATGATAAGCCGCATGCTCCGACACATAACCGGCGAGCTGCGCCACCTTAATTTCA 5228 Query 179242 TCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCG 179301 |||||| || | | ||||||||| | | |||||| | || ||||| || || Sbjct 5227 GTCTTGAGTTTTCTCTTGAAGCACGCGAAGAGCACCTTGCGCTGGCTGGGCTTTAGCCCA 5168 Query 179302 TCGGCCATGTGCGCGATGGAACGCTTCAAGTCTGCCAAGCTGAAA 179346 ||| | | | | ||||| |||| ||||| ||||| |||| Sbjct 5167 TCGACAACGCTAGGAATGGAGCGCTCGTTGTCTG-CAAGC-GAAA 5125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618411900453840