Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1059 185 1e-41 seq216 140 4e-28 seq963 113 5e-20 seq181 89.7 6e-13 >seq1059 Length=17963 Score = 185 bits (204), Expect = 1e-41 Identities = 754/1180 (64%), Gaps = 50/1180 (4%) Strand=Plus/Minus Query 104507 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 104566 |||||||| |||||||| ||| | || ||| | |||||||| || || | || | | Sbjct 16416 ATTCGGGGCACAAATGGCTCGTCAAACGGCATTGTACCAATGCTGCGAGTGTACAATGAC 16357 Query 104567 ACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTT 104623 |||||||| || || |||| | || || || || || | | || ||| || Sbjct 16356 ACAGCGCGTTACGTGGATCAGGGCGGTGGTAAGCGCAAAGGTGCGTTTGCCTGCTACATT 16297 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 ||||| |||||||| || || | |||||||| || |||| ||||| || | || Sbjct 16296 GAGCCGTGGCACGCCGACATTTTTGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAA 16237 Query 104684 GAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 ||| | || ||| || |||||||| | ||| || |||| || || || ||||||||| | Sbjct 16236 GAGTCACG-TGCGCGTGATCTCTTTTACGCGCTGTGGACGCCGGACCTGTTCATGAAGCG 16178 Query 104743 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802 ||| |||||| || | ||| ||||| || || || | || || || || | ||| Sbjct 16177 AGTGGAGGAGGACGGACAGTGGAGCCTCTTCTGCCCCAACGAAGCGCCGGGACTGTGCGA 16118 Query 104803 TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 | |||| ||| || || || || ||||| |||||||| | ||||| || ||| Sbjct 16117 CACGTGGGGTCCGGACTTCGAGGCGCTGTACACCAAGTACGAAAACGAAGGCCGCGCGCG 16058 Query 104863 TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 104922 | |||| | || || | | ||||| || | || | || || | ||||| || Sbjct 16057 CGAGACGATTCCGGCGCGCAAACTGTGGTTTGCGGTGCTTGACTCGCAGATTGAGACCGG 15998 Query 104923 TACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 104982 ||||| |||||||| ||||| || ||| ||| |||| || || |||| | || Sbjct 15997 CACACCGTACATGCTGTACAAGGATGCCGCCAACTCAAAGTCGAACCAGCAGAACCTCGG 15938 Query 104983 TGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 105042 ||| || |||| | || ||||||||| | || | |||| || ||| Sbjct 15937 CACAATCCGCAGCAGCAATTTGTGCACAGAAATCATTGAGTACACAGCACCTGACGAGGT 15878 Query 105043 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC------------- 105089 ||| ||||| ||| | || || || || || | || ||| | | Sbjct 15877 GGCCGTGTGCAACTTGGCGTCCATTGCGCTGAATATGTTTGTCAAGCAGCAACCGGACGC 15818 Query 105090 ---CAGAG-----ACAAA---GAC---ATTT---GATTATGAAAAACTCCACGAAGTTAC 105132 || || ||||| ||| ||| || |||| ||| | |||| || Sbjct 15817 CGGCACAGGCGGCACAAATCAGACCCCATTCTACGACCATGAGGCGCTCGCCAAAGTGAC 15758 Query 105133 GAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGAC 105192 || || || ||||| ||| | | |||||| |||| ||||| || ||| Sbjct 15757 CAAGCAGGTGACACGCAACCTGAACCGCATCATTGATGTCAATTACTACCCTGTGGAGGA 15698 Query 105193 TGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA 105252 || || || || ||| | || || || ||||| || || |||||||| || || || Sbjct 15697 GGCGAAGAACTCGAACATGCGCCATCGCCCGATTGGGCTTGGGGTTCAGGGGCTAGCTGA 15638 Query 105253 TGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCG 105312 || || || |||| | |||| || | |||| || | || ||||| || | Sbjct 15637 CACGTTTATCCTCATGCGCCTCCCATTCGAGAGCCACGAGGCACAAGAGCTCAAT-CGTG 15579 Query 105313 C-ATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGG 105368 || || ||||| || || || || |||||| |||| ||| |||| | | Sbjct 15578 ATATCTTCGAGACGATTTACTTTGCTGCGTGTGAGGC---TTCAATGGAGCTGGCGCAAG 15522 Query 105369 TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTG 105428 | ||| | |||||||| |||| || ||||| || ||| |||| ||||| |||| Sbjct 15521 AGCACGGTTCGTATGAAACATTTGCTGGCTCTCCCGCATCAGAAGGCAAACTTCAGTTTG 15462 Query 105429 ATATGTGGGAAGGTGAGACCAAGCTTCAC-----TACGACTGGGAAGCTCTCAAGGAACG 105483 || |||||| | ||| || || || ||||| |||| ||| |||||| || Sbjct 15461 ATTTGTGGGGCG-TGACGCCG-GCGTCCGGGCGATACGATTGGGCAGCGCTCAAGCAAAA 15404 Query 105484 CATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCAC 105543 ||| ||| | || | || ||| ||| | | || || ||||| || || ||||| Sbjct 15403 AATCCTTGAGCACGGCTTGCGCAACTCGCTCTTGGTAGCGCCCATGCCGACTGCTTCCAC 15344 Query 105544 CGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAG 105603 | || || ||||||| || || ||||||||||| |||||| | |||||||| | | Sbjct 15343 GTCGCAGATTCTGGGTAACAACGAGTGCTTTGAACCGTACACGTCAAACATCTACACGCG 15284 Query 105604 AAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 105643 | |||||||| ||||| | |||| ||||||||| Sbjct 15283 CCGCGTTCTCGCGGGCGAGTTCGCCGTTGTTAACAAGCAT 15244 >seq216 Length=49752 Score = 140 bits (154), Expect = 4e-28 Identities = 283/412 (69%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| |||||||| || || | |||| || || | ||| ||| ||||| || Sbjct 1355 CGATCAAATCGACCTGGGCGCAGCAACGCGCGGTCCAGCACATCGGAGCGGTTCGTTGCC 1296 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||||||| | || || | | ||||| || |||||||| | | ||| || Sbjct 1295 GCGATGACGATGATTCCGCTGTTCGCCTCAAACCCGTCCATCTCCACGAGCATTTGATTC 1236 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGTTGCTTTCCC 9700 | ||||| || ||||| ||||| | | ||| ||||| || | ||| || ||| Sbjct 1235 AGCGTTTGCTCACGTTCGTCATTTCCACCGGCGATACCG---GCTCCGCGCTGGCGTCCG 1179 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTT-GATTTTC---GCGAGCGACTTC 9756 || || || || || |||||||| | |||||| ||| | ||||| ||| ||| Sbjct 1178 ACCGCGTCGATTTCGTCAATGAAAATGATGCAAGGTGCGTTTTTCTTTGCGTTCGAG--- 1122 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 || ||||| || |||||| ||||||||||| ||||||||||||||||| | | | | Sbjct 1121 -AAAAGATCACGCACACGCGAAGCGCCCACACCCACAAACATCTCCACAAACTCGGAGCC 1063 Query 9817 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9875 | | || | || ||||||||| | ||||| || | ||| || || || || |||| Sbjct 1062 TGCA-ATCGAGAAGAAGGGGACGCCGGCCTCACCGGCCACGGCGCGCGCAAGCAGGGTCT 1004 Query 9876 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||||| ||||| ||| | || | |||| || || || |||||||| Sbjct 1003 TACCCGTTCCTGGAGGACCTTCCAGAATCACACCACGCGGGATTTTGGCGCC 952 >seq963 Length=27641 Score = 113 bits (124), Expect = 5e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||| ||||| || |||| ||||| || || || || || ||||| || || Sbjct 17410 TCCTTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCT 17351 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | ||||||||||||||| || |||||||| || ||| ||| ||| Sbjct 17350 TTCTGCGCAATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAAT 17291 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||||| || || || |||||||| || ||| || |||||| Sbjct 17290 GAGCTGATTTCGCGAGACGAGGGTCTGCACTGCGACTTTGCG 17249 >seq181 Length=69431 Score = 89.7 bits (98), Expect = 6e-13 Identities = 195/288 (68%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 ||| || | |||||| | || | ||| ||| | ||||| | | ||| ||||| || Sbjct 14179 ATCGAATCTACCTGGCCTTAGTAAAGCGGAATCTAAAATATCTGCCCTATTAGTCGCTGC 14238 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || |||| || ||| || | ||||| |||||||| |||||||| | ||| || | Sbjct 14239 AATAACAATAACACCAGTATTTCCCTCAAATCCATCCATTTCTGTCAACATTTGATTCAA 14298 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCA--TACCACCAGCACTGCGTTGCTTTCCCACG 9703 |||||| || | |||||||| | | || || ||| | || ||||| || || Sbjct 14299 AGTTTGCTCTCTCTCATCATTACC-GCCACCTAT-ACCTGTACCACGTTGGCGCCCAACA 14356 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATT----TTCGCGAGCGACTTCAAA 9759 |||||||| |||||||| || || ||||| ||| ||| || || || | ||| Sbjct 14357 GCATCAATTTCATCAATAAATACAATGCAAGGTGCATTAGCTTTTGCTTGC----TTAAA 14412 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 | ||| ||||| | || || || ||||||||||| || ||||| Sbjct 14413 TAAATCACGTACTCTAGAAGCACCTACGCCAACAAACATTTCAACAAA 14460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238825649360