Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1055 215 2e-50 seq189 183 9e-41 seq970 104 7e-17 seq2751 102 2e-16 >seq1055 Length=10011 Score = 215 bits (238), Expect = 2e-50 Identities = 1008/1583 (64%), Gaps = 42/1583 (3%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||||| || || || || || || || | || ||||| |||||||| || || Sbjct 7293 GGTATTGATTTGGGCACCACGTACTCGTGCGTGGGCGTGTGGCAGAATGATCGCGTCGAG 7234 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| || || ||||| || |||| ||||| || ||||| || || || || || Sbjct 7233 ATCATTGCGAACGACCAAGGAAATCGAACCACGCCGTCGTACGTGGCGTTCACAGACACG 7174 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | || || ||| | ||||| || || | || || || | || ||||| Sbjct 7173 GAGCGTCTCATCGGCGATGCGGCAAAGAACCAGGTGGCGATGAACCCGCACAACACGGTG 7114 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTT-CTGACAAATCTACACAATCTGATCT 349443 ||||| || |||||| | |||||| | ||| || | || || | || || Sbjct 7113 TTTGACGCAAAGCGAATGATTGGTCTGCGCTTTGACTCGCCG-TCCGTGCAGGCGGACCT 7055 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || || || || | || || ||| | | || || | |||||||| | Sbjct 7054 CAAGCACTTCCCGTTCAAGGTGGTGGGCGCAGAGGACAACAAGCCCAAGATTGAGGTCAA 6995 Query 349504 ATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 || || || || || || ||| || | || || ||||| || | ||||| | | || Sbjct 6994 GTACAAGGGCGAGACCAAGACA-TTCATGCCAGAGGAAATCTCGGCCATGGTGCTGGGTA 6936 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||||||||||| | || ||||| | | | || | | || ||| | || | Sbjct 6935 AGATGAAGGAAATCTCAGAGGCATACCTTGCCAAGGAGGTGAAGAACGCGGTTGTGACCG 6876 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG-CAGCATTGCG 349681 |||| || ||| || || | |||||| || || || ||||| || ||| ||||| Sbjct 6875 TACCTGCGCGTTTCAACGACTCGCAGCGTCTGGCCACCAAGGATGCCGGTCAG-ATTGCT 6817 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | ||||| | |||| ||||| || || || || || || ||||| || ||| | Sbjct 6816 GGTCTGAATGTGTTGCGAATCATTAACGAGCCAACGGCGGCTGCGATTGCCTACGGGTTG 6757 Query 349742 GATAAAATG------AGTGAC---CAA---GaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || | | | || | | || || || | | || |||| ||| | || Sbjct 6756 GACAGGAAGGAAGCAAGCGGCTCCCACTCCGAGAAGATGGTGCTCATTTACGATCTGGGA 6697 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGA---GGGAATTTTTGAAGTTAAA 349846 ||||| || || ||||| || || || | |||| || ||| | ||||| || || Sbjct 6696 GGTGGAACATTCGATGTGTCTCTTCTGAGCATTGACGACACGGGCGTCTTTGAGGTCAAG 6637 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT----TTC 349902 || || |||||||| || || | ||||| || || ||||| || ||||| || ||| Sbjct 6636 GCCACCGCTGGTGACACGCACTTGGGTGGTGAGGACTTTGACAACCGTCTGGTGAACTTC 6577 Query 349903 GCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATT------GGAGATAA-T 349954 ||||| ||||||| ||||| |||| || | ||| | || || | Sbjct 6576 ----TTTGTGCAAGAATTCAAGCG-CAAGAACAAGAAGGATCTCACCCAGGGCCCGAACT 6522 Query 349955 C--CTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCAT 350012 | | | || ||||| || || | || || || || || || ||| | | || |||| Sbjct 6521 CGGCGCGCGCCATGCGCCGTCTGCGCACGGCTTGCGAGCGCGCAAAGAGGACATTGTCAT 6462 Query 350013 CTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCAT 350072 | | || || || || ||||| ||||| | || || || || || | || | Sbjct 6461 CCGCCACGCAGACATCGATTGAGATTGACGCGCTGTACGACGGTGTTGACTTTTACTCGT 6402 Query 350073 CTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATC 350132 | || || || || |||||| || | || ||||| || || | | || |||| | Sbjct 6401 CCATCACGCGCGCCAAGTTTGAGGAGCTGTGCATGGACCTGTTCCGCGGCACGTTGGAGC 6342 Query 350133 CTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTT 350192 | || || | || | || || || || || ||| || | || || | || Sbjct 6341 CCGTAGAGCATGTGCTGAAGGAGGCGAAGGTGAGCAAGTCGGAGGTCGACGAGATCGTGC 6282 Query 350193 TAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATG 350252 | || || || ||||| || | ||||| || || ||| | || || || || || | Sbjct 6281 TGGTGGGCGGCTCTACGCGAGTGCCAAAGGTGCAGCAGCTGCTGCAGGACTTCTTCAACG 6222 Query 350253 GCAAAGAACCTT-CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTT 350311 |||| |||| | | ||| || | || |||||||| || ||||| || |||||||| || Sbjct 6221 GCAAGGAACTGTGCAAGACCA-TCAACCCAGATGAGGCCGTTGCCTACGGTGCTGCGGTG 6163 Query 350312 CAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGAT 350371 ||||| | ||| | | || ||| || || | | ||||| || || || ||| Sbjct 6162 CAGGCCGCCATTCTGACAGGTGATACCTCGTCCAAGACGCAGGATCTTTTGCTGCTCGAT 6103 Query 350372 GTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCT 350431 || || ||||| ||||| || | || || |||||| || ||||| || || Sbjct 6102 GTGACCCCACTGTCGCTGGGTCTGGAGACCGCTGGTGGTGTGATGACGACGCTGATCAAG 6043 Query 350432 AGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAG 350491 | || | || | || || || ||| || | || || |||| || || || ||| Sbjct 6042 CGCAACACGACGATCCCCACCAAGAAGCAGCAGATCTTCTCGACATACGCTGACAACCAG 5983 Query 350492 CCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAA 350551 |||| || ||||| || ||||||||||||||||| ||||| || || || || Sbjct 5982 CCAGGTGTGCTTATTCAGGTCTTTGAAGGTGAACGTGCGCGCACCAAGGACAACAACTTG 5923 Query 350552 CTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAA 350611 || || | ||| || || |||||||| ||| | || ||||| ||||| || Sbjct 5922 CTCGGCAAGTTTGAGCTGTCTGGTATTCCACCGGCGCCCCGCGGTGTTCCGCAGATCGAG 5863 Query 350612 GTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGT 350671 || | || ||| | ||| | || ||||| ||||| || | || | || || || | | Sbjct 5862 GTGACCTTTGATGTCGATGCTAACGGTATCTTAAACGTGTCTGCCGAGGACAAGTCGACT 5803 Query 350672 GGTAAAAGTAGTAAGGTAGAAATTACTAATGATAAATCTAGACTTTCAAAAGAAGATATT 350731 || || | || ||| | ||| || || || || | | || || || || | || Sbjct 5802 GGAAACAAGAGCAAGATCACAATCACGAACGACAAGGGTCGCCTGTCGAAGGACCAGATC 5743 Query 350732 GAGAAAATGACACAAGATGCCGA 350754 ||||| ||| || |||||||| Sbjct 5742 GAGAAGATGGTCCAGGATGCCGA 5720 >seq189 Length=13781 Score = 183 bits (202), Expect = 9e-41 Identities = 349/512 (68%), Gaps = 23/512 (4%) Strand=Plus/Plus Query 350132 CCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTT 350191 || || ||||| | | | |||||||||||||| |||| | | | |||| ||||| || Sbjct 12031 CCAGTTGAAAATGCAATTAAAGATGCAAAAATCTCCATAGACAAAGTTGACGAAGTTGTG 12090 Query 350192 TTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAAT 350251 || || ||||| ||||||||||| || ||| ||| || || |||| ||| Sbjct 12091 TTGGTAGGTGGATCTACACGTATACCTGCTGTTAGGGAGTGTGTAAAGAAGATTTTAAAT 12150 Query 350252 GGCAAAGAACCTTCTAGATCAA----TTAATCCAGATGAAGCTGTTGCATATGGTGCTGC 350307 ||||||||| ||||| ||||||| ||||||| |||||| |||||| || Sbjct 12151 ---AAAGAACCTA----ATCAAAGCGTTAATCCTGATGAAGTTGTTGCGATTGGTGCAGC 12203 Query 350308 TGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACT 350367 |||||| ||| | | || |||| | |||| ||| ||| || | ||||| Sbjct 12204 TGTTCAAGCAGGTGTACTAGCTGGTGA----AGTT---AAA-----GATATACTTCTACT 12251 Query 350368 AGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 |||||||||||| | || | || | ||||| | |||| ||||||||| |||| Sbjct 12252 AGATGTAACTCCTTTATCTTTAGGTGTTGAAACATTAGGTGGAGTAATGACAAAGATTAT 12311 Query 350428 TCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAA 350487 | ||||||||| ||| | || || ||||| || || ||||| ||| | |||||| Sbjct 12312 TACTAGAAATACAACTATTCCAACTAAAAAATCAGAAGTATTTTCAACAGCAGTAGATAA 12371 Query 350488 TCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAA 350547 ||| ||| || |||||| || || |||| ||| | | ||||||||||||| Sbjct 12372 TCAACCAAATGTTGAAATTCATGTGCTTCAAGGAGAAAGAGAATTTGCTAAAGATAATAA 12431 Query 350548 TAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGAT 350607 | || ||| ||||| || || |||| |||| || ||| | || || || || Sbjct 12432 AAGCCTAGGAACATTTAGGTTAGATGGAATTTTACCAGCTCCAAGAAGTGTGCCGCAAAT 12491 Query 350608 TGAAGTCTCTTTCGATATTGATTCAAATGGTA 350639 |||||| | |||||||| ||||| ||||||| Sbjct 12492 TGAAGTTACATTCGATATAGATTCTAATGGTA 12523 Score = 131 bits (144), Expect = 5e-25 Identities = 210/299 (70%), Gaps = 12/299 (4%) Strand=Plus/Plus Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCA---G 349648 |||||||| ||| | || || || || || |||||||||||||| ||| | || | Sbjct 11485 GGTGAAACTATAAAGCAAGCAGTGATAACAGTTCCAGCCTATTTTAACGATTCTCAAAGG 11544 Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708 | ||| || || |||| |||| || || || ||| |||| || | || | ||| Sbjct 11545 CAATCT---ACTAAGAATGCCGGCAAGATAGCTGGCTTAGATGTACTTCGCATAGTCAAT 11601 Query 349709 GAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaT 349768 || || || ||||| || | |||||||| |||||||||| | | || ||| ||| Sbjct 11602 GAGCCTACAGCTGCTTCACTAGCATATGGACTTGATAAAAAAAAT----AATGAAACAAT 11657 Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828 | ||| |||||||||||||||| || || ||||| |||||| || || | ||| ||| Sbjct 11658 A--CTTGTTTTTGATTTAGGTGGAGGAACATTTGACGTATCATTATTAGAAGTTGGAGAT 11715 Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || | || || ||| | | || | || ||||| || | |||||||| |||||||| Sbjct 11716 GGCGTATTCGAGGTTTTATCTACATCAGGAGATACCCACTTGGGTGGAGATGATTTTGA 11774 Score = 129 bits (142), Expect = 2e-24 Identities = 250/367 (68%), Gaps = 14/367 (4%) Strand=Plus/Minus Query 182929 TACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGTG 182988 |||||||||| || | ||| |||| |||||||| || || |||| || ||| |||| Sbjct 12523 TACCATTAGAATCTATATCGAATGTAACTTCAATTTGCGGCACACTTCTTGGAGCTGGTA 12464 Query 182989 GAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTTGCTCTCTCGC 183048 ||||||| ||| ||||| |||| | ||||||||||||| | |||| || | Sbjct 12463 AAATTCCATCTAACCTAAATGTTCCTAGGCTTTTATTATCTTTAGCAAATTCTCTTTCTC 12404 Query 183049 CTTCATATACTTGAATAGTAACTGCTGGCTGATTATC-ACTATAAGTAGAAAAAACTTGC 183107 ||| | || ||||| ||| ||| |||||||| ||| || ||||| |||| Sbjct 12403 CTTGAAGCACATGAATTTCAACATTTGGTTGATTATCTACTGCT-GTTGAAAATACTTCT 12345 Query 183108 TTTTTATTAATAGGAATAGTTGAATTTCGCGGAACAATTACAGTCATTACTTCTCTGGCA 183167 ||| ||| | |||||||||| ||||| | || ||| ||||||||| | | Sbjct 12344 GATTTTTTAGTTGGAATAGTTGTATTTCTAGTAATAATCTTTGTCATTACTCCACCTAAT 12285 Query 183168 GTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTTATCT 183227 ||||| | ||||| ||||| || | ||||||||||| | || ||| |||| || Sbjct 12284 GTTTCAACACCTAAAGATAAAGGAGTTACATCTAGTAGAAGTATATC------TTTAACT 12231 Query 183228 GATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCT 183287 | || || | | |||||||||||||||||| |||||| ||||||| Sbjct 12230 ------TCACCAGCTAGTACACCTGCTTGAACAGCTGCACCAATCGCAACAACTTCATCA 12177 Query 183288 GGGTTAA 183294 || |||| Sbjct 12176 GGATTAA 12170 >seq970 Length=23808 Score = 104 bits (114), Expect = 7e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 140541 GTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCA 140600 || ||||| || || || ||||| || || | |||||| || || || || || || || Sbjct 22536 GTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCCGTCCTCCAGCTGCTTGCCC 22595 Query 140601 GCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT 140660 ||||| || | || ||||| || || || || ||||| || || ||||| || || || Sbjct 22596 GCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTG 22655 Query 140661 ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 |||||||| || | || || | || || || | || | |||||| || || || || Sbjct 22656 ACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGATTGTCTTGCCCGTGAGGGTC 22715 Query 140721 TTTACAAAAATCTGCAT 140737 || || ||||||||||| Sbjct 22716 TTGACGAAAATCTGCAT 22732 >seq2751 Length=18403 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || ||||| || || || || || ||||| || || || || || || || |||||||| Sbjct 18402 TGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATC 18343 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || ||||||||||||| || || | || || || || || | ||||||||| Sbjct 18342 TTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCCG 18283 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||||||||||||| Sbjct 18282 GTCAGCGTCTTCACAAAAATCTGCAT 18257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515195885610242