Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1059 280 2e-70 seq963 188 8e-43 >seq1059 Length=17963 Score = 280 bits (310), Expect = 2e-70 Identities = 576/844 (68%), Gaps = 28/844 (3%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGG-GCTAGAAACCTCGATGATTTCTGTGCA 79115 || |||| ||||||||||||| |||||| || ||| || || |||||||||||||| Sbjct 15857 GACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTAC-TCAATGATTTCTGTGCA 15915 Query 79116 CAAATTAGACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCG 79173 |||||| | || ||| ||||||| ||||| |||||| ||| ||| ||| Sbjct 15916 CAAATTG--CTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGAGTTGGCGGCA 15973 Query 79174 TCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAG 79233 |||||||| ||||||||| || |||||||||| ||| | || || | ||| Sbjct 15974 TCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCACCGCAAACCAC 16033 Query 79234 ATGTCCCGGGCCCGGACAACCTTCTTGTAC---CGACCCTGTGCGACGTACGTCCGGTAC 79290 | | || ||| | || | ||| | | || || | ||||| | |||| Sbjct 16034 AGTTTGCGCGCCGG---AATCGTCTCGCGCGCGCGGCCTTCGTTTTCGTACTTGGTGTAC 16090 Query 79291 AACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATC 79350 | | | | ||| || || | ||| ||| ||||| |||| ||||| | Sbjct 16091 AGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGGCGCTTCGTTGGGGCAGAAG 16150 Query 79351 AGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCC 79410 ||| ||| | |||||| ||| || || |||||| |||||||| ||||||| || Sbjct 16151 AGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCG 16210 Query 79411 GTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470 ||||| || || ||| ||| || | ||| |||||| ||||| ||||| || Sbjct 16211 TAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAAC 16270 Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530 || | |||||||||||||||||||| | ||| ||| |||| ||| |||||||| || Sbjct 16271 TCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCA 16330 Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG 79590 |||||||| | ||||| || || |||| ||| | ||||| ||||| || || |||||| Sbjct 16331 CCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCG 16390 Query 79591 -TCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACC----GCTCGCCCGAATGTTCGAGC 79645 | | ||| ||| || || || || |||| | | | || || |||||||| Sbjct 16391 TTTGACGA-GCCATTTGTGCC-CCGA---ATGTAGCTCTTGGTGGCACGGATGTTCGAAA 16445 Query 79646 AGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 | || |||||||| |||| ||||||| || |||||| ||| ||||| || | Sbjct 16446 TGGAGAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCAT 16505 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC---AGCTCGACATCTGTG 79762 ||||||| ||||||||||| || ||||| | | ||| |||| |||| | ||| | Sbjct 16506 AGATGCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCT---GAGCTGCG 16562 Query 79763 GGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCA 79822 || ||| | || ||||| | ||||||| || ||||||||||||||||| || Sbjct 16563 GGCGCGGCGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACA 16622 Query 79823 TCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGC 79882 || ||||||||||| |||| ||||| ||||| ||||||||| || || |||| Sbjct 16623 ACATTTCGTACGTCTCGAGAACGCTCGGGATGTCGTGCATGTGGATGCCTACTGCCACGC 16682 Query 79883 GCAT 79886 |||| Sbjct 16683 GCAT 16686 Score = 237 bits (262), Expect = 2e-57 Identities = 941/1464 (64%), Gaps = 89/1464 (6%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || || || |||||||| ||||| ||||| | || | |||||| ||||| Sbjct 16686 ATGCGCGTGGCAGTAGGCATCCACATGCACGACATCCCGAGCGTTCTCGAGACGTACGAA 16627 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 || || || |||||||||||||| || ||||||| | ||||| || | ||| Sbjct 16626 ATGTTGTCGCAAAAGTTCTTCACGCATGCCTCGCCGACTTTGTTCAATGCAAGCACGCCG 16567 Query 19238 AACCCGCAGATGTCGAGCT---GTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 ||||||| | |||| | || || || | ||||| || ||| || || ||| Sbjct 16566 CGCCCGCAGCTC---AGCTCGTGCTTTCTGCTGACCATGAAAGAAGACTCGATCGAAGGC 16510 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 ||||| || ||||| ||| |||||| || ||||||| |||| || ||||| || Sbjct 16509 ATCTATGATACGCTGAAGCGCTGCGCGGTGATTTCCAAGTCAGCCGGCGGCATCGGTCTC 16450 Query 19355 CACTGCTCGAATATCCGGTCGA----GTGGTACACGAATCAATGGGACGAACGGAGTAGC 19410 | ||||| ||||| | | | | |||| || || || || || | Sbjct 16449 TCCATTTCGAACATCCGTGCCACCAAGAGCTACAT---TCGG-GGCACAAATGGCTCGTC 16394 Query 19411 CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGG 19470 |||| || || |||||||| || || | ||| |||| || | ||||| | ||||| Sbjct 16393 AAACGGCATTGTACCAATGCTGCGAGTGTACAATGACACAGCGCGTTACGTGGATCAGGG 16334 Query 19471 GGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCAT 19530 || || || ||||| || |||| ||| |||| | ||||| |||||||| ||| | | Sbjct 16333 CGGTGGTAAGCGCAAAGGTGCGTTTGCCTGCTACATTGAGCCGTGGCACGCCGACATTTT 16274 Query 19531 GGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTT 19590 || |||||||| |||||| |||||| || | || ||| || || || ||||| Sbjct 16273 TGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAAGAGTCACGTGCGCGTGATCTCTT 16214 Query 19591 CACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCA 19650 || |||||| |||||||| |||||| || || ||| |||||| | | ||| Sbjct 16213 TTACGCGCTGTGGACGCCGGACCTGTTCATGAAGCGAGTGGAGGAGGACGGACAGTGGAG 16154 Query 19651 CCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGA 19710 ||| | ||||| ||||| || || || |||| | || || ||| | | Sbjct 16153 CCTCTTCTGCCCCAACGAAGCGCCGGGACTGTGCGACACGTGGGGTCCGGACTTCGAGGC 16094 Query 19711 GTTGTACCGGACTTACGTAGCCCAGGGCCG---GTTCAAGAAGGTGGTCCGGGCCCGGGA 19767 | ||||| | |||| | | | ||||| | | ||| | | ||||| | || | Sbjct 16093 GCTGTACACCAAGTACGAAAACGAAGGCCGCGCGCGCGAGACGAT--TCCGG-CGCGCAA 16037 Query 19768 CGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAA 19827 | ||| || || | ||| | ||||||||||||||||||||| ||||| Sbjct 16036 ACTGTGGTTTGCGGTGCTTGACTCGCAGATTGAGACCGGCACACCGTACATGCTGTACAA 15977 Query 19828 GGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA--AGTCGTCCAAC 19885 ||| ||||| ||| | ||||| || ||| ||||| ||||| | ||| || | ||| Sbjct 15976 GGATGCCGCCAACTCAAAGTCGAACCAGCAGAACCTCGGCACAATCCGCAGCAG--CAAT 15919 Query 19886 CTGTGTACTGAAATCATGGAGGTTTCCAAGC--CGGACGAGACTGCCGTGTGTAATCTGG 19943 |||| || |||||||| ||| | | ||| | |||||| |||||||| || ||| Sbjct 15918 TTGTGCACAGAAATCATTGAG--TACACAGCACCTGACGAGGTGGCCGTGTGCAACTTGG 15861 Query 19944 CGTCCCTGTGC-CTGCCGACTTTCGTCAAG------------GCCTCCTCCTTCGAC--- 19987 ||||| | ||| ||| | || |||||| ||| | | || | Sbjct 15860 CGTCCAT-TGCGCTGAATATGTTTGTCAAGCAGCAACCGGACGCCGGCACAGGCGGCACA 15802 Query 19988 --TTTG-CCAAATTGTACGAG------------------GTGACCCGGGTCGTCACGCGT 20026 | | || ||| ||||| |||||| | || || || Sbjct 15801 AATCAGACCCCATTCTACGACCATGAGGCGCTCGCCAAAGTGACCAAGCAGGTGACACGC 15742 Query 20027 AATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAAT 20086 || ||||| ||| |||| ||| || | ||||| |||| |||| || ||||| Sbjct 15741 AACCTGAACCGCATCATTGATGTCAATTACTACCCTGTGGAGGAGGCGAAGAACTCGAAC 15682 Query 20087 ATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGAC--GTTT-TCATGATG 20143 |||||||| || ||||| | | | || || ||||| || || ||| |||| || | ||| Sbjct 15681 ATGCGCCATCGCCCGATTGGGCTTGGGGTTCAGGGGCTAGCTGACACGTTTATCCTCATG 15622 Query 20144 CTCGGCCTCTCATTCGACGATCC-CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGC 20202 | ||||| ||||||| || || | |||| | |||||||| | ||||||||| | Sbjct 15621 C---GCCTCCCATTCGA-GAGCCACGAGGCACAAGAGCTCAATCGTGATATCTTCGAGAC 15566 Query 20203 CGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGA 20262 | ||| || || || || || || || ||||| |||| |||| || Sbjct 15565 GATTTACTTTGCTGCGTGTGAGGCTTCAATGGAGCTGGCGCAAGAGCACGGTTCGTATGA 15506 Query 20263 GACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCAC 20322 || || || || ||||| || || || | || ||| || |||||||||| || Sbjct 15505 AACATTTGCTGGCTCTCCCGCATCAGAAGGCAAACTTCAGTTTGATTTGTGGGGCGTGAC 15446 Query 20323 TGAGA----------ATGAGTTTTGG-AGCGCCCTCAAGGTTGAGATCAAGACCCACGGG 20371 | || | || || ||||| ||||| | ||| ||||| Sbjct 15445 GCCGGCGTCCGGGCGATACGATTGGGCAGCGC--TCAAGCAAAAAATCCTTGAGCACGGC 15388 Query 20372 CTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGG 20431 | ||||||||| | | || |||||||||||||| || || || | ||||| |||| Sbjct 15387 TTGCGCAACTCGCTCTTGGTAGCGCCCATGCCGACTGCTTCCACGTCGCAGATTCTGGGT 15328 Query 20432 AACAACGAG-GCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGG 20490 ||||||||| ||||| || ||||||||| | ||||||||| ||| || || || || Sbjct 15327 AACAACGAGTGCTTT-GAACCGTACACGTCAAACATCTACACGCGCCGCGTTCTCGCGGG 15269 Query 20491 TGAGTTCGTCATGGTAAACAAGCA 20514 ||||||| | | || |||||||| Sbjct 15268 CGAGTTCGCCGTTGTTAACAAGCA 15245 Score = 114 bits (126), Expect = 1e-20 Identities = 301/450 (67%), Gaps = 11/450 (2%) Strand=Plus/Plus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || || ||||| || ||||| || |||||||| ||| ||||||||||| | |||||| Sbjct 14939 CGGGTGCGCAAGTAATACATACCGGTCTTGAGGCCCAGTTTCCATCCGTAAAAGTGCATG 14998 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTCTCC---ATGAAGATGTTGAGCGACTGGGACTGG 78303 ||||||||| || | | ||| | | ||| | || | ||| || ||| Sbjct 14999 GAGGACAGCTTG-CCTGCGTTGGGGGCAGCCATATGCACAT-TCAAGCTCATGCTT-TGG 15055 Query 78304 TCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAG 78363 |||||| |||| || |||||||||||||| | | | | ||| |||| ||| ||||| Sbjct 15056 TCGATGAACGCGCCACGGTCGGCCGCCATCTTCAACAATGTCTTCTGCGAAATTTCCCAA 15115 Query 78364 ATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGC--GCTT-GTACGCTCCCA 78420 | ||| ||||| | |||||| || | || ||| | |||| |||| ||| Sbjct 15116 ACGGTTTTGTAAAGTTCACGCAGCTCAGCCGGAATCTCCGTCAGGCTTTGTACTGAACCA 15175 Query 78421 CCGGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCC 78480 | | | || | ||||| | | |||||| | | |||| ||||| Sbjct 15176 TTGTTTGCGATGATCTTGTTCTTCGTCGCATTGTTCCAAAGGCCAAGACTCTGCAGATCA 15235 Query 78481 CGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATG 78540 | | || ||| ||||| | | |||||||||| || || |||||| ||||||| Sbjct 15236 CTCAGCAAATGCTTGTTAACAACGGCGAACTCGCCCGCGAGAACGCGGCGCGTGTAGATG 15295 Query 78541 TTGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGT 78599 || | ||||||||| || ||||| ||||||||| |||| ||||| | || || || || Sbjct 15296 TTTGACGTGTACGGTTC-AAAGCACTCGTTGTTACCCAGAATCTGCGACGTGGAAGCAGT 15354 Query 78600 CGGCATGGGTGCGACCAGTAGAGAATTCCG 78629 ||||||||| || |||| || || || || Sbjct 15355 CGGCATGGGCGCTACCAAGAGCGAGTTGCG 15384 >seq963 Length=27641 Score = 188 bits (208), Expect = 8e-43 Identities = 544/819 (66%), Gaps = 26/819 (3%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| ||| |||||| || ||||| | ||| || | | ||| |||| Sbjct 17767 TCCTTCTGGACCGCCGAGGAAATCGACCTGAGCTCGGACTTGCTGCAGTGGCGATCGCTC 17708 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || | || |||||||| ||||||||| || || ||||||||||| || || ||| Sbjct 17707 AACAAGGATGAGCAGCACTTCATCAAGCATGTGCTCGCCTTCTTCGCCGCATCGGACGGA 17648 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 || || |||| ||| | | | ||| || ||||| |||||||| | || || || Sbjct 17647 ATCGTTCTGGAGAATTTGTGCGAGCGCTTCTCGAAGGACGTCCAGATCCCGGAAGCGCGC 17588 Query 59793 TCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | || || | | ||| ||| | ||| |||||||| || |||||||| | | Sbjct 17587 TGCTTTTATGGCTTCCAGATCGCG-ATGGAGAACATCCACTCGGAAACGTACTCCTTGCT 17529 Query 59852 GATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA-GA 59910 || || | || || || || || || ||| ||| |||| || || || || Sbjct 17528 CATTGACACGTACGTGTCCGACCCAGAGGAAAAGAACCATCTCTTCCACGCTATGGAAGA 17469 Query 59911 CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGA--GC 59968 | ||| || || || |||| || || ||||| || |||||| || | | || Sbjct 17468 GATTCCCTGC-GTGAAGAAAAAGGCCGAGTGGGCTTTGACGTGGATC--TCATCGCACGC 17412 Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 ||| |||||| | ||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 17411 ATCCTTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTC 17352 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 ||||| || || || |||||||| ||||| || |||||||| || || | ||| ||| Sbjct 17351 TTTCTGCGCAATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAA 17292 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCA-C 60147 ||||||||||| || |||||||| || || || ||||| ||| | || | | || | Sbjct 17291 TGAGCTGATTTCGCGAGACGAGGGTCTGCACTGCGACTTTGC-GTGCCTCT-TGTACAGC 17234 Query 60148 ACCTATTGGAAAAA--TGCCCTTCCAA--GGATATTCACAAGATTGTTCAGTGGGCTTGT 60203 | | | | || |||| | || || | | ||| || | | | || ||| Sbjct 17233 ATGTGCCCGCAGAAGCTGCCGAACGAAACGG---TGCTCAACATCATCACGAGCGC-TGT 17178 Query 60204 GAAGTG-GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGC 60262 ||| |||| || || || | || ||||| || ||| | | || || ||| || Sbjct 17177 TGCGTGCGAGAAGGAATTTATTATTGACGCGCTGCCGTGCGACTTGATCGGGATGAACAG 17118 Query 60263 TGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGT---TTGG 60319 | | ||| |||| || ||| |||||||||| ||||||| || ||||| | || Sbjct 17117 CGAACTTATGGCGCAATATATTGAGTTTGTCGCCGACCGCC---TGCTCCAGTCCCTCGG 17061 Query 60320 AGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGA 60379 | | | | ||||| || ||||| || |||||||||||| || ||| | || Sbjct 17060 GCACGAAAAAGTTTACCACGCCCGCAACCCGTTTGACTGGATGGAGCTGATTTCGCTCGA 17001 Query 60380 AGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||| ||||||||||| || || || || Sbjct 17000 AGGGAAGACCAACTTTTTTGAGAAGCGTGTGGGAGAGTA 16962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548504134328160