Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1059 232 7e-56 seq2016 132 5e-26 >seq1059 Length=17963 Score = 232 bits (256), Expect = 7e-56 Identities = 391/557 (70%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 |||||||| || | || |||||| ||||| | || | || | ||||||||||| Sbjct 16686 ATGCGCGTGGCAGTAGGCATCCACATGCACGACATCCCGAGCGTTCTCGAGACGTACGAA 16627 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | || ||||||| ||| ||||| ||| |||| || ||||||| || | ||| Sbjct 16626 ATGTTGTCGCAAAAGTTCTTCACGCATGCCTCGCCGACTTTGTTCAATGCAAGCACGCCG 16567 Query 53315 CACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | ||| ||| | |||| |||| ||| || | ||||| || ||||||||||| ||| Sbjct 16566 CGCCCGCAGCTC---AGCTCGTGCTTTCTGCTGACCATGAAAGAAGACTCGATCGAAGGC 16510 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 ||||| || ||||| ||| || || || ||||||| | || || |||||| || Sbjct 16509 ATCTATGATACGCTGAAGCGCTGCGCGGTGATTTCCAAGTCAGCCGGCGGCATCGGTCTC 16450 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | |||||| ||||||| | | | | || || ||| || || ||| ||| | | Sbjct 16449 TCCATTTCGAACATCCGTGCCACCAAGAGCTACATTCG-GGGCACAAATGGC-TCGTCAA 16392 Query 53491 T-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 || || || || ||||| || || | ||| |||| || || ||||| | ||||| | Sbjct 16391 ACGGCATTGTACCAATGCTGCGAGTGTACAATGACACAGCGCGTTACGTGGATCAGGGCG 16332 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 |||| |||||||| || |||| ||| |||| | ||||||||||||||||||||| | | Sbjct 16331 GTGGTAAGCGCAAAGGTGCGTTTGCCTGCTACATTGAGCCGTGGCACGCCGACATTTTTG 16272 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTT 53668 |||| ||||| ||||| ||| || || | |||||| || ||| ||||| || ||| Sbjct 16271 AGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAAGAGTCACG-TGCGCGTGATCTCTTT 16213 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || ||||||| |||||||| |||||| | |||||| |||||| ||||| | Sbjct 16212 TACGCGCTGTGGACGCCGGACCTGTTCATGAAGCGAGTGGAGGAGGACGGACAGTGGAGC 16153 Query 53729 CTGATGTGCCCGAACGA 53745 || | ||||| ||||| Sbjct 16152 CTCTTCTGCCCCAACGA 16136 >seq2016 Length=8234 Score = 132 bits (146), Expect = 5e-26 Identities = 211/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 || || ||||||||||| | || || || || || || || || || |||||| Sbjct 5434 CGTGTAAAAATGTAACGCGCCGACGCTGCGTCTTTACCTCCTTGCAGCCGGGTTCCGAAT 5375 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 || ||| |||| | | | ||| | ||||||||| || |||||||| || || | | Sbjct 5374 TGACCAGACGGCACAAGCAAGTTAATGTTGTTGGCACCGACAAAGTTCTGCGCAAGCCCG 5315 Query 117422 ACAATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGT 117479 || ||||| || | ||| ||||| || || ||||| |||| ||||||| ||| | Sbjct 5314 ACGATCGTCGACAT--GAGTGAAGCCTCGCCGTGATGATAAGCCGCATGCTCCGACACAT 5257 Query 117480 AGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAA 117539 | || || ||||| |||||||| || || | | | || || |||||| ||| || | | Sbjct 5256 AACCGGCGAGCTGCGCCACCTTAATTTCAGTCTTGAGTTTTCTCTTGAAGCACGCGAAGA 5197 Query 117540 TCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGT 117599 |||||||||||| || ||||| || ||||| | ||| ||| || || |||| | ||| Sbjct 5196 GCACCTTGCGCTGGCTGGGCTTTAGCCCATCGACAACGCTAGGAATGGAGCGCTCGTTGT 5137 Query 117600 C 117600 | Sbjct 5136 C 5136 Score = 122 bits (134), Expect = 1e-22 Identities = 211/304 (69%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| || || || ||||| || | || || || || || ||| |||||| ||||| Sbjct 5438 CAATCGTGTAAAAATGTAACGCGCCGACGCTGCGTCTTTACCTCCTTGCAGCCGGGTTCC 5379 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || || ||||| ||| | || | ||| | ||||||||| || || || ||||| || | Sbjct 5378 GAATTGACCAGACGGCACAAGCAAGTTAATGTTGTTGGCACCGACAAAGTTCTGCGCAAG 5319 Query 152142 ATTCACAATCGT-GCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGA 152200 || ||||| | | || || || || ||||| ||||| |||| ||||||| | Sbjct 5318 CCCGACGATCGTCGACATG-AGTGAAGCCTCGCCGTGATGATAAGCCGCATGCTCCGACA 5260 Query 152201 TGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGT 152260 || || || | |||||||||||| || || ||| | || || |||||| || ||| Sbjct 5259 CATAACCGGCGAGCTGCGCCACCTTAATTTCAGTCTTGAGTTTTCTCTTGAAGCACGCGA 5200 Query 152261 AAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGA 152320 | | ||||||||||||| || || | || || || ||| |||||| || |||| | Sbjct 5199 AGAGCACCTTGCGCTGGCTGGGCTTTAGCCCATCGACAACGCTAGGAATGGAGCGCTCGT 5140 Query 152321 TGTC 152324 |||| Sbjct 5139 TGTC 5136 Score = 102 bits (112), Expect = 9e-17 Identities = 174/248 (70%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 118106 TGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTT 118165 || ||||||||||| |||||||| ||||| || | || |||| ||| | | ||| || Sbjct 4588 TGCTGGAGCCCGAGAATCTTTTTCAGGTTCGACAGCTCTGCATTGTCCATGATCTGCTTG 4529 Query 118166 ATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCA 118225 ||||| || || ||||| | |||| || || || || ||||||||| | | || Sbjct 4528 TGCGTGGCTTCGCGCACGTTCAGAAGCTTGCCGCGAAGCGGGAACACGCCATAGTAATCG 4469 Query 118226 CGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATA 118285 || || | || | ||| | ||| || || || || || ||||||||||| || | | Sbjct 4468 CGACCGATGACCGAAAGGCCTGAAATCGCGAGCGCTTTGGCAGAGTCACCCTCCGTCAGA 4409 Query 118286 ATAAGAGTGCACT--CGGTGCT-GCGATGAGTACCGGCCCAATTAGCATCATCCAGCTTC 118342 || | |||||||| | | || |||| ||| |||||| || ||||| ||||| || Sbjct 4408 ATCAAAGTGCACTTGCAGGACTCGCGA-GAG--CCGGCCTTGTTTGCATCGTCCAGTTTA 4352 Query 118343 GGAACGCC 118350 || ||||| Sbjct 4351 GGCACGCC 4344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195383637200