Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2016 163 3e-35 seq1059 149 7e-31 seq970 149 7e-31 seq1200 136 5e-27 seq2751 123 3e-23 seq963 107 2e-18 >seq2016 Length=8234 Score = 163 bits (180), Expect = 3e-35 Identities = 218/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 31950 TGAAGATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAA 32009 || ||| | | |||| |||||||| ||| | || || || ||||| |||||||| Sbjct 5132 TGCAGACAACGAGCGCTCCATTCCTAGCGTTGTCGATGGGCTAAAGCCCAGCCAGCGCAA 5191 Query 32010 GGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTC 32069 |||| | | ||| ||| |||||| || || || ||| || |||||||||||||| | Sbjct 5192 GGTGCTCTTCGCGTGCTTCAAGAGAAAACTCAAGACTGAAATTAAGGTGGCGCAGCTCGC 5251 Query 32070 GGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCAT 32129 || || ||| | ||||| |||| ||||| ||||||||||| || ||| | || || Sbjct 5252 CGGTTATGTGTCGGAGCATGCGGCTTATCATCACGGCGAGGCTTCACTCATGTCGACGAT 5311 Query 32130 TGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGG 32189 ||| ||||| ||||||||||||||||| || ||| | ||||| || | ||| ||||| Sbjct 5312 CGTCGGGCTTGCGCAGAACTTTGTCGGTGCCAACAACATTAACTTGCTTGTGCCGTCTGG 5371 Query 32190 ACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 || || || |||||||| || || || || || ||| | |||||||| || || Sbjct 5372 TCAATTCGGAACCCGGCTGCAAGGAGGTAAAGACGCAGCGTCGGCGCGTTACATTTTTAC 5431 Query 32250 CCG 32252 || Sbjct 5432 ACG 5434 Score = 147 bits (162), Expect = 2e-30 Identities = 236/338 (70%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 31207 CCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATT 31266 || || || ||||| || ||| |||||| | | | |||| | ||||||| | ||| Sbjct 4350 CCTAAACTGGACGATGCAAACAAGGCCGGCTCTCGCGAGTCCTGCAAGTGCACTTTGATT 4409 Query 31267 ATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGC 31326 | || ||||||||||| || || ||||| || ||| | ||| | || | || ||| Sbjct 4410 CTGACGGAGGGTGACTCTGCCAAAGCGCTCGCGATTTCAGGCCTTTCGGTCATCGGTCGC 4469 Query 31327 AATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTT 31386 || | || ||||| ||||| || ||||||| | ||||| || || ||| | Sbjct 4470 GATTACTATGGCGTGTTCCCGCTTCGCGGCAAGCTTCTGAACGTGCGCGAAGCCACGCAC 4529 Query 31387 AAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCAT 31446 || ||| | | ||| |||| |||| | || |||||||||||||| |||||||| ||||| Sbjct 4530 AAGCAGATCATGGACAATGCAGAGCTGTCGAACCTGAAAAAGATTCTCGGGCTCCAGCAA 4589 Query 31447 GGCAAGGTATATAAT--TCACTGAGAGAA----TTGCGGTACGGTCGCCTCATGATTATG 31500 |||| ||| || | | | | ||| ||||||||||||| || |||| ||| Sbjct 4590 AACAAGACGTATGATGCTGAAAGCGTGAAGCAGTTGCGGTACGGTCATGTCTTGATCATG 4649 Query 31501 ACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 || ||| ||| | ||| || ||||||||||| ||||| Sbjct 4650 ACGGACCAAGACCACGATGGTAGTCACATCAAAGGTCT 4687 >seq1059 Length=17963 Score = 149 bits (164), Expect = 7e-31 Identities = 456/690 (66%), Gaps = 25/690 (4%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 |||||||| ||||||||||||||||| |||| |||| |||| | |||||| ||||| Sbjct 15856 GGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTACTCAATGATTTCTGTGCA 15915 Query 80967 CAAATTAGAAGACT--TAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 |||||| | | || ||||| || ||||| | |||||| ||||| | |||| || Sbjct 15916 CAAATT-GCTG-CTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGAGTTGGCGGCA 15973 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 |||||||| ||||||||| || |||||||| | ||| || | || | || ||| Sbjct 15974 TCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCACCGCAAACCAC 16033 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGC 81143 | | ||||||| | | || ||| ||||||| | ||||||| ||| ||| Sbjct 16034 AGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCGTTTTCGTACTTGGTGTACAGC 16093 Query 81144 TTCGTCGAACTTGGCAC----CGTGAAGTTCAGTGAGGTCTGGGCAC-TCGTTAGGGCAC 81198 | ||||| | | || |||| | || ||| ||| | ||||| ||||| Sbjct 16094 -GCCTCGAAGTCCGGACCCCACGTGTCGCACA-----GTCCCGGCGCTTCGTTGGGGCAG 16147 Query 81199 ATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGG 81258 | ||| ||| | ||| | ||| || ||||||||| ||| || |||| || Sbjct 16148 AAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGC 16207 Query 81259 GCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317 ||| || || || || ||| || | ||| || | || ||||| ||||| ||||| Sbjct 16208 GCGTAAAAGAGATCACGCGCA-CGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAG 16266 Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG--- 81374 || || | ||||| || ||||| ||||| | || ||| | || || ||||| Sbjct 16267 GAACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTT 16326 Query 81375 ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434 || || ||||| | |||||||| || || | || | || |||| ||| || | || Sbjct 16327 ACCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAAT 16386 Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTG 81492 || | |||| || || || ||| ||| | | | | | |||| || | || Sbjct 16387 GCCGTTTGACGAGCCATTTGTGCCC-CGA-ATGTAGCTCTTGGTGGCACGGATGTTCGAA 16444 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 || || ||||||||||| || | |||| |||||| || || || |||| || ||| Sbjct 16445 ATGGAGAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCA 16504 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATG 81582 || || || ||||| |||| ||||||| Sbjct 16505 TAGATGCCTTCGATCGAGTCTTCTTTCATG 16534 >seq970 Length=23808 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || | ||||| ||||| Sbjct 22732 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACAATCACGTTGGAGGTCGAGTCCTCG 22673 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || ||||| |||||||| || || || ||||||||| Sbjct 22672 GACACCATCGATAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCAGACCAG 22613 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | |||||||| || ||||| || ||||| | || || || |||||||||| Sbjct 22612 CAGCGCTTGATTTTTGCGGGCAAGCAGCTGGAGGACGGACGAACACTGTCAGACTATAAC 22553 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || | || | || ||||||| |||||||| Sbjct 22552 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTGCGTCTGCGCGGTGG 22506 >seq1200 Length=24482 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| |||||||| || |||||||| || || || ||||| ||||| Sbjct 18898 ATCATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTGGAGTCC 18839 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | || | ||||| || ||||||||||||||||| || || ||||| Sbjct 18838 TCGGACACGATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGAT 18779 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || || || || ||||| || ||||| | || || || | ||||| Sbjct 18778 CAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTAGAGGACGGGCGCACGCTCTCGGACTAC 18719 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| ||||| || || | || |||| || ||||| || Sbjct 18718 AACATTCAGAAGGAGTCCACCCTCCACTTGGTGCTGCGCCTGCGCGGAGG 18669 >seq2751 Length=18403 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 18257 ATGCAGATTTTTGTGAAGACGCTGACCGGAAAGACCATCACGCTCGAGGTGGAGTCGTCC 18316 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| || ||||||||||||||||| || || || |||||| Sbjct 18317 GACACGATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 18376 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||||| || ||||| || || ||||| Sbjct 18377 CAGCGCCTGATTTTCGCCGGAAAGCA 18402 >seq963 Length=27641 Score = 107 bits (118), Expect = 2e-18 Identities = 298/452 (66%), Gaps = 4/452 (1%) Strand=Plus/Minus Query 64417 GAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTT 64476 || ||||||||||||||| || || || |||||||| || |||||||| || | Sbjct 17698 GAGCAGCACTTCATCAAGCATGTGCTCGCCTTCTTCGCCGCATCGGACGGAATCGTTCTG 17639 Query 64477 GAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTAT 64536 ||||||||| | || | ||||| || |||||||| || ||||| | || ||| Sbjct 17638 GAGAATTTGTGCGAGCGCTTCTCGAAGGACGTCCAGATCCCGGAAGCGCGCTGCTTTTAT 17579 Query 64537 GCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAG 64596 | | ||| | || | || || || ||||| || | | ||||||| | Sbjct 17578 GGCTTCCAGATCGCGATGGAGAACATCCACTCGGAAACGTACTCCTTGCTCATTGACACG 17519 Query 64597 TTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGA-GACTGTACCCGC 64655 | || || || | || ||| | || ||| ||||| || || | || || Sbjct 17518 TACGTGTCCGACCCAGAGGAAAAGAACCATCTCTTCCACGCTATGGAAGAGATTCCCTGC 17459 Query 64656 TGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGA-ATCGTGGGTCGTCGTTTGGTC 64714 || | |||||||| || ||||| | |||||| |||| | | || |||| Sbjct 17458 -GTGAAGAAAAAGGCCGAGTGGGCTTTGACGTGGATCTCATCGCACG-CATCCTTTGCAG 17401 Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||| | || |||||| || ||||||||||| || || || || ||||| | | Sbjct 17400 AGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCTTTCTGCGCAA 17341 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | || ||||| || ||||| || || ||||| || || |||| || |||||||| | Sbjct 17340 TCTTTTGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAATGAGCTGATTT 17281 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCG 64866 | || |||||||| || ||| || |||||| Sbjct 17280 CGCGAGACGAGGGTCTGCACTGCGACTTTGCG 17249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570288913555680