Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq148 120 2e-22 >seq148 Length=44851 Score = 120 bits (132), Expect = 2e-22 Identities = 383/582 (66%), Gaps = 24/582 (4%) Strand=Plus/Plus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||| ||||| ||||| |||| || |||||||||||||||| || ||| | || Sbjct 22191 GTACACGTGCGCGTCGCCCAACACATGCACAAACTCTCCCGGTTGAAGGCCGACAATATG 22250 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 |||| |||| || || || | |||||||| ||||| || || || || | ||||| Sbjct 22251 CGCCACCATGATGGTCAGCAGCGCATAGCTGGCAATGTTGAAAGGCACACCCAAACCCAT 22310 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGC--TCACGTAAAACTG 30072 ||| | || | |||||| | ||| ||||| ||||| ||| | || |||||||||| || Sbjct 22311 GTCGCAAGAGCGCTGGTACATCTGGCACGACAGCTCGCCGCTGGCATTCACGTAAAATTG 22370 Query 30073 ---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30129 |||| ||||||||| || | ||||| | | | || ||||| || Sbjct 22371 GGCGAACAT---GTGGCACGGTGGCAAGGCCATTTGCGATAGCGCGGCCGGATTCCACGC 22427 Query 30130 GCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCTGATGAG-GTCCACGGCGTTTTGC 30187 | || || ||||| | ||| ||| || |||| | | | | || | | ||| Sbjct 22428 ACTCATGACCATGCGGCGGTCATTCGGGTTTGTGC--GCAGCGTATCAATCACACCCTGC 22485 Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 ||||||||||| || ||| | |||||| || | ||| || ||| ||| || || Sbjct 22486 AGCTGATCCACGCCTTGCCCGGCGTAGTCGGCGTGCTTGTTCGAGTATGTTGCGCCAAAG 22545 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC---GAAG 30304 || | |||||| || || || ||||| |||||||| ||| || | |||| | Sbjct 22546 TGGCGCCACTGAAAGCCATAGACCGGACCCAGGTCGCCCGGCTCAC---GCTCAGTCAGA 22602 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT--TTACCCCCTTCT 30362 || | |||| ||| || | || ||||| ||||||| || | |||| | | Sbjct 22603 CCGAGACTATCCAGAAACTCGCGCGAGCCGTTCCCGTCCCAAATGTGGATACCGCGT--G 22660 Query 30363 CAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30422 | | ||| |||| || ||| || | || |||||||||| |||||| ||||| Sbjct 22661 CCGCGAGTAGGTTGGCGTCCGTGCTGCCGCGCACAAACCACAGCATTTCCTCCGCGACGC 22720 Query 30423 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTGT 30463 | ||| || || | ||| || ||||| || |||||| ||| Sbjct 22721 CGCGCCAGAACACGCGCTTTGTGGTGAGCAGCGGGAAAGTGT 22762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406295474949288