Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1200 118 7e-22 seq970 107 1e-18 >seq1200 Length=24482 Score = 118 bits (130), Expect = 7e-22 Identities = 174/243 (72%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 34474 TCGTCGCCGCCTCTA---AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTA 34530 ||| ||||||||| || |||| |||||| ||||| ||| |||||| |||||||| Sbjct 18660 TCGACGCCGCCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTG 18719 Query 34531 TAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGG 34590 || || || || || ||| |||| || || || || || || || || || ||||| || Sbjct 18720 TAGTCCGAGAGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGA 18779 Query 34591 TCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTC 34649 || ||||| | ||||||||||| ||| || | || ||| | || ||||| Sbjct 18780 TCTGGCGGGATGCCCTCCTTGTC-CTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGA 18838 Query 34650 GCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||||| || | || ||||| || || || | ||| |||||||| ||||||||| | Sbjct 18839 GGACTCCACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGAT 18898 Query 34710 GAT 34712 ||| Sbjct 18899 GAT 18901 >seq970 Length=23808 Score = 107 bits (118), Expect = 1e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || | || |||||| || |||||||| ||||| |||||||| Sbjct 22515 AGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCGT 22574 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || ||||| || || ||||| ||||| ||||| | || ||| Sbjct 22575 CCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCC 22634 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||||| | || || || || ||||| | ||| || |||| || Sbjct 22635 TTGTCTTGAATCTTC-GCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGT 22693 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || | || || || ||||||||||||||| Sbjct 22694 GATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGTTG 22736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314718038998262