Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq250 596 2e-165 >seq250 Length=47047 Score = 596 bits (660), Expect = 2e-165 Identities = 696/937 (74%), Gaps = 2/937 (0%) Strand=Plus/Plus Query 176155 GGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTT-ATCGT 176213 |||||||||||||| | |||||||| | | || ||| | | ||| || ||| | Sbjct 1282 GGTTGGTTTGGTGTATTAATGATTCCTACATTATTAACAGCTACTTC-TGTATTCATCAT 1340 Query 176214 TGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATC 176273 |||||| |||| || || || || ||||| || ||||| || |||||||| || || || Sbjct 1341 TGCATTCGTTGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTC 1400 Query 176274 TCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGG 176333 | |||| || || |||||||| ||||| || || || | ||||| || || || || Sbjct 1401 TTTACTATACGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGG 1460 Query 176334 ACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGG 176393 | |||||||||||||| |||||||| || | | ||||| ||| | ||||| || || Sbjct 1461 TATTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGG 1520 Query 176394 ACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCA 176453 |||| || | ||||| ||||| | | ||| | | |||||||| || | Sbjct 1521 GTGCTACCCTCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGA 1580 Query 176454 ATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 176513 ||||||||||| ||| | |||| ||||||||||||||| |||||||| |||||| || Sbjct 1581 GTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCC 1640 Query 176514 AGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGA 176573 ||| | || || | || || ||| | |||| || | |||||||| |||||||| Sbjct 1641 AGTTGCAGCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGA 1700 Query 176574 TGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCA 176633 |||||||||| | || ||||| |||||||||||||| ||| ||||||||||||| ||||| Sbjct 1701 TGGTATGCCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCA 1760 Query 176634 CAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCT 176693 ||||||||||||||||||||||| | || || || ||||| |||||||||||||| Sbjct 1761 TAACATTCTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCT 1820 Query 176694 TTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAA 176753 ||| || |||||||| || || |||||| | | | || ||||| ||||| Sbjct 1821 ATTCAGTGCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAA 1880 Query 176754 CGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGC 176813 ||||| ||||| |||||||| ||||| ||||||||||| || || |||||||| || Sbjct 1881 TGAATCTGCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGC 1940 Query 176814 TGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAG 176873 |||||| ||||||||||||||| | || ||||| |||||| |||||| ||||| | Sbjct 1941 TGCACATGGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTC 2000 Query 176874 TCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGT 176933 |||||||||||| | | || |||||||| | || ||||| || | || ||| Sbjct 2001 ACTTCACTTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGT 2060 Query 176934 TTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTC 176993 | || ||||| || ||| | || ||||||||||||||||| ||||| | |||| | Sbjct 2061 ATCAACTATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCA 2120 Query 176994 TGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGT 177053 ||| || ||| || |||| |||||| |||||||||| ||| | ||||||||||| Sbjct 2121 AGGTCGTGTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGT 2180 Query 177054 TATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 |||||| |||||||| ||||||||||||||| | ||| Sbjct 2181 TATGCATGAGCGTAACGCTCACAACTTCCCATTAGAC 2217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603471663348480