Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq148 197 1e-45 >seq148 Length=44851 Score = 197 bits (218), Expect = 1e-45 Identities = 395/582 (68%), Gaps = 5/582 (1%) Strand=Plus/Plus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 ||||||||||| ||| | ||||| || |||||| |||||| | ||| || || Sbjct 22177 TCGATGTGGTTGTTGTACACGTGCGCGTCGCCCAACACATGCACAAACTCTCCCGGTTGA 22236 Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 | || || | ||| || | |||| || ||||| || || || ||||||||||| ||| Sbjct 22237 AGGCCGACAATATGCGCCACCATGATGGTCAGCAGCGCATAGCTGGCAATGTTGAAAGGC 22296 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC- 6726 || || || |||||||| | || || || || | |||||| |||||||| || | || Sbjct 22297 ACACCCAAACCCATGTCGCAAGAGCGCTGGTACATCTGGCACGACAGCTCGCCGCTGGCA 22356 Query 6727 --GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTC 6784 ||||| |||||| || |||||||||| || | ||||| | | || | | Sbjct 22357 TTCACGTAAAATTGGGCGAACATGTGGCACGGTGGCAAGGCCATTTGCGATAGCGCGGCC 22416 Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 || |||||||| | ||| || || | | ||||| ||||| || || || ||| Sbjct 22417 GGATTCCACGCACTCATGACCATGCGGCGGTCATTCGGGTTTGTGCGCAGCGTATCAATC 22476 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGA-TACTC 6903 || ||||||||| ||| | || || || | ||||| || | ||| ||| || Sbjct 22477 ACACCCTGCAGCTGATCCACGCCTTGCCCGGCGTAGTCGGCGT-GCTTGTTCGAGTATGT 22535 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 || |||||||| | |||||| || || |||||||| |||| ||||||| ||| || Sbjct 22536 TGCGCCAAAGTGGCGCCACTGAAAGCCATAGACCGGACCCAGGTCGCCCGGCTCACGCTC 22595 Query 6964 TGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 | | || | | |||||||| || || || |||| ||||||| || | | || Sbjct 22596 AGTCAGACCGAGACTATCCAGAAACTCGCGCGAGCCGTTCCCGTCCCAAATGTGGATACC 22655 Query 7024 CCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGAC 7083 || | || ||| |||| || |||| || | ||| |||||||||| ||||| | Sbjct 22656 GCGTGCCGCGAGTAGGTTGGCGTCCGTGCTGCCGCGCACAAACCACAGCATTTCCTCCGC 22715 Query 7084 CACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 ||||| |||| |||| || || || || |||||||| || Sbjct 22716 GACGCCGCGCCAGAACACGCGCTTTGTGGTGAGCAGCGGGAA 22757 Score = 197 bits (218), Expect = 1e-45 Identities = 395/582 (68%), Gaps = 5/582 (1%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || |||||||| || || || || |||| |||| ||||| | ||||| |||||||| Sbjct 22757 TTCCCGCTGCTCACCACAAAGCGCGTGTTCTGGCGCGGCGTCGCGGAGGAAATGCTGTGG 22698 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || ||| | || |||| || |||| ||| || | || || | | || |||||| Sbjct 22697 TTTGTGCGCGGCAGCACGGACGCCAACCTACTCGCGGCACGCGGTATCCACATTTGGGAC 22638 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | |||| || || || |||||||| | | || | | || ||| ||||||| Sbjct 22637 GGGAACGGCTCGCGCGAGTTTCTGGATAGTCTCGGTCTGACTGAGCGTGAGCCGGGCGAC 22578 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA-TCGGGGGAGCGA 34458 |||| |||||||| || || |||||| | |||||||| || || ||| ||| | Sbjct 22577 CTGGGTCCGGTCTATGGCTTTCAGTGGCGCCACTTTGGCGCAACATACTCGAACAAGC-A 22519 Query 34459 AGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCG 34518 || ||||| | || || || | ||| ||||||||| ||||| || || || Sbjct 22518 CGCCGACTACGCCGGGCAAGGCGTGGATCAGCTGCAGGGTGTGATTGATACGCTGCGCAC 22459 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 ||||| ||||| | | || || ||| | |||||||| ||| | || | | || Sbjct 22458 AAACCCGAATGACCGCCGCATGGTCATGAGTGCGTGGAATCCGGCCGCGCTATCGCAAAT 22399 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC---GCGAATGGGGAGCTGTC 34635 ||| | || |||||||||| || |||||| ||||| || | || |||||||| Sbjct 22398 GGCCTTGCCACCGTGCCACATGTTCGCCCAATTTTACGTGAATGCCAGCGGCGAGCTGTC 22339 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||| | || || || || | |||||||| || || ||||| ||||||||||| || Sbjct 22338 GTGCCAGATGTACCAGCGCTCTTGCGACATGGGTTTGGGTGTGCCTTTCAACATTGCCAG 22279 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 || || ||||| || |||| | || ||| | || || | || || ||| | || Sbjct 22278 CTATGCGCTGCTGACCATCATGGTGGCGCATATTGTCGGCCTTCAACCGGGAGAGTTTGT 22219 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 |||| |||||| || ||||| | ||| ||||||||||| Sbjct 22218 GCATGTGTTGGGCGACGCGCACGTGTACAACAACCACATCGA 22177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448245511714080