Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1200 149 1e-30 seq970 140 8e-28 seq2751 107 4e-18 seq1059 104 5e-17 >seq1200 Length=24482 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || || ||||| || |||| || || | || || Sbjct 18684 AGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCGTCC 18743 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||| || || || || || | || ||||||||| Sbjct 18744 TCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGGATGCCCTCCTTGTCC 18803 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| ||| || |||||||| ||||||||| Sbjct 18804 TGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGCGTGATCGTC 18863 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 18864 TTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq970 Length=23808 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || ||||||||||| || | || || | ||| || |||||||||||||| Sbjct 22536 GTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCCGTCCTCCAGCTGCTTGCCC 22595 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | ||| || ||||| || || | ||||||||||| || ||||| || Sbjct 22596 GCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTG 22655 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||||||||| ||| || ||||| | ||||| ||||| |||||||| ||| Sbjct 22656 ACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGATTGTCTTGCCCGTGAGGGTC 22715 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | |||||| || Sbjct 22716 TTGACGAAAATCTGCATGTT 22735 >seq2751 Length=18403 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 |||||| || ||||| || ||||| || ||||| || || | || ||||||||||| || Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAAT 18344 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| ||||| || || || ||||| || || |||||||| ||||| |||||||| Sbjct 18343 CTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCC 18284 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| | |||||| Sbjct 18283 GGTCAGCGTCTTCACAAAAATCTGCAT 18257 >seq1059 Length=17963 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 178217 CCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGA 178276 ||||| || |||||||| |||| ||| ||||||| ||||| || | || || Sbjct 16067 CCTTCGTTTTCGTACTTGGTGTACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGT 16126 Query 178277 CCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATG 178336 || || || || |||||||||||||| |||||||| ||||| |||| |||||| |||||| Sbjct 16127 CCCGGCGCTTCGTTGGGGCAGAAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATG 16186 Query 178337 AAGAGGTCAGAGGTCCA 178353 || ||||| | ||||| Sbjct 16187 AACAGGTCCGGCGTCCA 16203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159107237172110