Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1200 100 2e-16 seq970 82.4 7e-11 >seq1200 Length=24482 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| | | ||| | |||||| || || ||| ||| || || || || || || | Sbjct 18668 GCCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGA 18727 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || |||| || ||||| || ||||| || || | |||||||| || | || Sbjct 18728 GAGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGG 18787 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCA 39235 | || ||| |||||| || ||| |||| ||| | | | ||| || ||||||| Sbjct 18788 GATGCCCTCCTTGTCCTGAATCTTCGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCCA 18846 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | |||||| | || ||||||||||| || |||||||| ||||| Sbjct 18847 CCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq970 Length=23808 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || ||||| || | ||||||||| |||| || ||||| ||||||||||| Sbjct 22541 CTCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAA 22600 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | ||||||||||| | || | || || ||||| || ||| |||| | Sbjct 22601 AATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATT 22660 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || ||||| || |||| |||||| | || ||||| || || || || Sbjct 22661 ATCGATGGTGTCCGAGGACTCGACCTCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGAC 22720 Query 39273 AAAGATTTGCATCTT 39287 || || ||||| || Sbjct 22721 GAAAATCTGCATGTT 22735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429529821447782