Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq970 118 7e-22 seq1200 98.7 7e-16 >seq970 Length=23808 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||||||||| || || ||||| | || || || ||| Sbjct 22735 AACATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACAATCACGTTGGAGGTCGAGTCC 22676 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || ||| ||||| ||||| | |||||||| Sbjct 22675 TCGGACACCATCGATAATGTCAAGGC-GAAGATTCAAGACAAGGAAGGCATCCCGCCAGA 22617 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || ||||| ||||| || ||||| |||| ||| || | || || Sbjct 22616 CCAGCAGCGCTTGATTTTTGCGGGCAAGCAGCTGGAGGACGGACGAACACTGTCAGACTA 22557 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || || ||||| || || || || ||| Sbjct 22556 TAACATCCAGAAGGAGTCGACCTTGCACTTGGTT 22523 >seq1200 Length=24482 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| || |||||||| ||||| || || ||| || Sbjct 18895 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTGGAGTCCTCG 18836 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | ||||||||||| Sbjct 18835 GACACGATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGATCAG 18776 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || || || || || || |||| ||||| | || |||||| Sbjct 18775 CAGCGCTTGATCTTCGCGGGGAAGCAGCTAGAGGACGGGCGCACGCTCTCGGACTACAAC 18716 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 18715 ATTCAGAAGGAGTCCAC 18699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997183851112