Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1200 129 1e-24 seq970 120 7e-22 seq1039 105 2e-17 seq2760 104 6e-17 >seq1200 Length=24482 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | |||||| ||||| || || || | ||||| || | | || Sbjct 18675 CGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTG 18734 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| || |||||||||||||| |||||||| | || || || || ||||| || || Sbjct 18735 CGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGGATGCCC 18794 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| || ||||| ||||| |||| ||||| || | | Sbjct 18795 TCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGC 18854 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||||||||||||||||| Sbjct 18855 GTGATCGTCTTGCCCGTCA 18873 >seq970 Length=23808 Score = 120 bits (132), Expect = 7e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| | || || || || |||| || || || | || ||| Sbjct 22512 CGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTT 22571 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || || || | || || ||||| ||||| || ||| Sbjct 22572 CGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCT 22631 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| ||| ||| ||||||||||| |||| || || || ||| Sbjct 22632 TCCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAAC 22691 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||| | || || | ||| | ||||| || Sbjct 22692 GTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGTT 22735 >seq1039 Length=14389 Score = 105 bits (116), Expect = 2e-17 Identities = 98/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || ||||| |||||||| ||||||||||| || ||||| Sbjct 5441 GAAAATTTGACCATCAGTAATTGAAATAACGTTTGTAGGAATATAAGCAGACACGTCACC 5382 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGAT-CCACCACCAAAATTTTTATTTC 4588 |||||| || || | | |||||| || || | || | |||||||| || | |||||| Sbjct 5381 TGCTTGAGTCTCAATGATAGGTAATGCAGTCA-TGCTCCCACCACCTAAGCTATTATTTA 5323 Query 4589 AC 4590 || Sbjct 5322 AC 5321 >seq2760 Length=1504 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| |||| ||||| ||||||||||||||||| ||||||||||| | | | Sbjct 938 TGGTAAGGTTCTCCGCGTTGCATCAAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 879 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | ||||||| | || | | |||| || ||| || |||| Sbjct 878 CCGTCAATTCCTTTGAGTTTCACCCTTGCGAGCATACTCCCCAGGCGGGATACTTAACGC 819 Query 7855 GTTAGCT 7861 ||||||| Sbjct 818 GTTAGCT 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192485148171716