Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq148 105 5e-18 >seq148 Length=44851 Score = 105 bits (116), Expect = 5e-18 Identities = 187/269 (70%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671 ||||||| | |||| | ||| ||||| | |||| || | ||||| ||| Sbjct 22135 GGAAAGGCGCGAGGCTGACGCTCCAGCTGCTGCAAAAGCGCATCGATGTGGTTGTTGTAC 22194 Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731 ||||| || || |||| || |||||||||||||||| || ||| | || ||| Sbjct 22195 ACGTGCGCGTCGCCCAACACATGCACAAACTCTCCCGGTTGAAGGCCGACAATATGCGCC 22254 Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791 | |||| || || || | |||||||| ||||| || ||||| || | |||||||| Sbjct 22255 ACCATGATGGTCAGCAGCGCATAGCTGGCAATGTTGAAAGGCACACCCAAACCCATGTCG 22314 Query 29792 CCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG-TCGC--TCACGTAAAACTG---A 29845 | || | |||||| | ||||||||| ||||| ||| | || |||||||||| || Sbjct 22315 CAAGAGCGCTGGTACATCTGGCACGACAGCTCGCCGCTGGCATTCACGTAAAATTGGGCG 22374 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||||| |||||||| || | |||||| Sbjct 22375 AACATG---TGGCACGGTGGCAAGGCCAT 22400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406148280356404