Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq963 104 2e-17 >seq963 Length=27641 Score = 104 bits (114), Expect = 2e-17 Identities = 241/362 (67%), Gaps = 5/362 (1%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| | |||||||| || || |||| ||| ||||||| |||||| || || | Sbjct 17239 ACAAGAGGCACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGA 17298 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 |||| | ||| ||||| | || | ||| || |||||||| || ||| || || || | Sbjct 17299 ACGTGAGTCCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGG 17358 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGCT 4718 | || || || ||||| || ||||||||||| || | || | || || || || Sbjct 17359 AGAAAAAAATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGTGCG 17418 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 || ||||| | || ||||| | || |||||||| ||||| ||||| | Sbjct 17419 ATG----AGATCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCC 17474 Query 4779 ATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 ||||||| || | | | ||||| |||||| | || ||||| || || | | Sbjct 17475 ATAGCGTGGAAGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAG 17534 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 ||| |||| || || || || || || || ||||| || || |||||||| | ||| Sbjct 17535 GAGTACGTTTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCT 17594 Query 4899 TC 4900 || Sbjct 17595 TC 17596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427033913133662