Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq148 100 2e-16 >seq148 Length=44851 Score = 100 bits (110), Expect = 2e-16 Identities = 376/579 (65%), Gaps = 18/579 (3%) Strand=Plus/Plus Query 27162 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 27221 ||| ||||| ||||| |||| || |||||||||||||||| || ||| | || Sbjct 22191 GTACACGTGCGCGTCGCCCAACACATGCACAAACTCTCCCGGTTGAAGGCCGACAATATG 22250 Query 27222 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 27281 |||| |||| || || || | |||||||| ||||| || || || || | ||||| Sbjct 22251 CGCCACCATGATGGTCAGCAGCGCATAGCTGGCAATGTTGAAAGGCACACCCAAACCCAT 22310 Query 27282 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-ATCGC--TTACGTAAAACTG 27338 ||| | || | |||||| | ||| ||||| ||||| || | || | |||||||| || Sbjct 22311 GTCGCAAGAGCGCTGGTACATCTGGCACGACAGCTCGCCGCTGGCATTCACGTAAAATTG 22370 Query 27339 ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 27398 | ||||||||| || | ||||| | | | || ||||| || | Sbjct 22371 GGCGAACATGTGGCACGGTGGCAAGGCCATTTGCGATAGCGCGGCCGGATTCCACGCACT 22430 Query 27399 CACGATGATGCGCCTGTC-TTCTGGGTTGTTCCTGATGAG-GTCCACGGCGTTTTGCAGC 27456 || || ||||| | ||| ||| || |||| | | | | || | | |||||| Sbjct 22431 CATGACCATGCGGCGGTCATTCGGGTTTGTGC--GCAGCGTATCAATCACACCCTGCAGC 22488 Query 27457 TGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGC 27516 |||||||| || ||| | |||||| | | ||| || ||| ||| || || || Sbjct 22489 TGATCCACGCCTTGCCCGGCGTAGTCGGCGTGCTTGTTCGAGTATGTTGCGCCAAAGTGG 22548 Query 27517 CTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC---GAAGCCC 27573 | ||| || || || || ||||| |||||||| ||| || | |||| | || Sbjct 22549 CGCCACTGAAAGCCATAGACCGGACCCAGGTCGCCCGGCTCAC---GCTCAGTCAGACCG 22605 Query 27574 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT--TTACCCCCTTCTCGG 27631 | |||| ||| || | || ||||| ||||||| || | |||| | | | | Sbjct 22606 AGACTATCCAGAAACTCGCGCGAGCCGTTCCCGTCCCAAATGTGGATACCGCGT--GCCG 22663 Query 27632 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 27691 ||| |||| || ||| || | || |||||||||| |||||| ||||| | Sbjct 22664 CGAGTAGGTTGGCGTCCGTGCTGCCGCGCACAAACCACAGCATTTCCTCCGCGACGCCGC 22723 Query 27692 TCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTGT 27729 ||| || || | ||| || ||||| || |||||| ||| Sbjct 22724 GCCAGAACACGCGCTTTGTGGTGAGCAGCGGGAAAGTGT 22762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369493626845834