Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq963 125 1e-23 >seq963 Length=27641 Score = 125 bits (138), Expect = 1e-23 Identities = 298/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| || || || ||||| || |||| ||| | || || || ||||| Sbjct 17247 CACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGT 17306 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || || || || ||||||||||| ||||| |||||| || || || || Sbjct 17307 CCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAA 17366 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-ACTGGCTTCGTTGTGTAT 48319 || ||||| || || ||||| ||| || | |||| | | || | || || | || Sbjct 17367 ATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGTGCGATGAG-AT 17425 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 |||| ||||| || ||||| ||||| || || || || ||| ||||| | || Sbjct 17426 CCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGAA 17485 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATT 48437 |||| ||| ||||| | || ||||| || || || | || || ||| || Sbjct 17486 GAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGA--GTACGTT 17543 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||| || || || || || ||||| || || ||||| || | |||||| | |||| Sbjct 17544 TCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGATC 17603 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || || ||| | | || || || ||||||||| || ||||| || || || Sbjct 17604 TGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGCG 17663 Query 48558 AAAAATGCTAATACATGTTTAATAAA 48583 || || || | ||||| || || || Sbjct 17664 AAGAAGGCGAGCACATGCTTGATGAA 17689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694642628352960