Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq963 129 8e-25 seq1059 104 3e-17 >seq963 Length=27641 Score = 129 bits (142), Expect = 8e-25 Identities = 299/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| || || || || || || |||| ||| | || || || ||||| Sbjct 17247 CACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGT 17306 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| || || ||||| ||||||||||| || || |||||| || || || || Sbjct 17307 CCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAA 17366 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA-AT 46808 || ||||| || || || || ||||| || | |||| | | || | |||| || Sbjct 17367 ATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGT-GCGATGAGAT 17425 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 |||| | |||||| || ||||||||||| || || || || ||| ||||| | || Sbjct 17426 CCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGAA 17485 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATT 46926 |||| ||| ||||| || || || || || || || | || || ||| || Sbjct 17486 GAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGA--GTACGTT 17543 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || ||||| || || || ||||| || || ||||| || | ||||| | ||| Sbjct 17544 TCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGATC 17603 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || || | | || || || |||||||||| || ||||| || || || Sbjct 17604 TGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGCG 17663 Query 47047 AAAAATGCCAATACATGTTTAATAAA 47072 || || || | ||||| || || || Sbjct 17664 AAGAAGGCGAGCACATGCTTGATGAA 17689 >seq1059 Length=17963 Score = 104 bits (114), Expect = 3e-17 Identities = 421/656 (64%), Gaps = 12/656 (2%) Strand=Plus/Plus Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||||| || || |||| || || ||||| || || || || |||| || || ||| Sbjct 16156 CCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAA 16215 Query 76639 TAGATCTCGGGTTCTACGT---TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTC 76695 ||||| || | |||| ||||| || || ||||| || || |||||||| Sbjct 16216 GAGATCACGCGC---ACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTC 16272 Query 76696 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACC 76755 | ||| || | ||||| || || | || || | |||| || ||| ||| Sbjct 16273 AAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACC 16332 Query 76756 TCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTT 76815 |||||||| | || | || |||| ||| || |||| || |||||| | ||||||||| Sbjct 16333 GCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTT 16392 Query 76816 AGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAG 76875 || | |||||||| || ||| || || ||||| || || ||| || || Sbjct 16393 TGACGAGCCATTTGTGCCCCGAATGTAGCTCTTGGTGGCACGGATGTTCGAAATGGAGAG 16452 Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 || || || || || || || || | || ||||| |||| || ||||||||||| Sbjct 16453 ACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGATGCC 16512 Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAG-ACATTTGATGATGAACAG 76994 || || || || ||||| | || ||||| || | || | || | | | Sbjct 16513 TTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCA-CGAGCTGAGCTGCGGGCGCGGCG 16571 Query 76995 TTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGT 77054 | | |||||| ||||| || || || ||||| ||||| | |||| || | | | || Sbjct 16572 TGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGT 16631 Query 77055 ATGTTTCAATAACTGCTTCTATATCCCATTGA--TGAATTCCTACAGCGACACGCATCAA 77112 | || || | ||| || || || | | | || || ||||| || || ||||||| Sbjct 16632 ACGTCTCGAGAAC-GC-TCGGGATGTCGTGCATGTGGATGCCTACTGCCACGCGCATCAG 16689 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| ||||| ||||| || || || || || ||| | ||| || ||| | Sbjct 16690 CATGTGCTGCGGTCGCTCCACCACCTGTCCGTTCATGCGCAAAAGGTACGAACGTTCGAG 16749 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAAT 77228 || || || ||||| |||| ||| | || || | |||||||| || ||| || Sbjct 16750 CGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGTAAATGATCGCCGCAT 16805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712907540196480