Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq250 657 0.0 seq316 518 4e-142 >seq250 Length=47047 Score = 657 bits (728), Expect = 0.0 Identities = 758/1018 (74%), Gaps = 2/1018 (0%) Strand=Plus/Plus Query 183187 TGGGAATCCTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTT 183246 |||||| |||||| ||| |||| |||||| | ||||| | ||| | ||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 183247 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTG-CTTCATCGTTGCCTTCGT 183305 || | | |||||||| || | || |||| | | |||| |||||| |||| ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTA-CTTCTGTATTCATCATTGCATTCGT 1349 Query 183306 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTA 183365 ||||||||||| || || || || || ||||| ||||| |||||||| || | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 183366 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTT 183425 || |||||||| ||||||||||| ||| |||| ||| || ||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 183426 CTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCA 183485 ||| || || |||||||| || || | || |||||| | || |||||||| |||| Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 183486 ACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATT 183545 || | || || ||||| | | || || |||||||||||||||||||||||| | Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 183546 GTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGC 183605 |||||| | |||||||||||||||||| |||||| | || || ||||| || Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 183606 TGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCC 183665 |||||| ||||| ||| || |||| || | |||||||| || |||||||||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 183666 CCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCT 183725 | ||||| ||| || || |||| ||| |||| |||||||| ||||| ||||| || Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 183726 GATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGC 183785 |||||||| |||||| | ||||| |||||||| || ||||| ||||| |||||||| Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 183786 AATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACA 183845 ||||||||||| || || ||||| | | |||||||| ||||| ||| || Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 183846 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGG 183905 |||||||||||||||||||||||||||||||| || || |||||||| ||||| ||||| Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 183906 ATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTT 183965 |||||||||||| | || ||||| |||||| || ||||| |||||||| |||||||| Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 183966 CTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTAT 184025 |||| | | | |||||||| || || || ||||| || || | ||| ||||| Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTAT 2069 Query 184026 GGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 184085 ||| |||||| | |||||||| ||||||||||| || | |||| | ||||||||||| Sbjct 2070 GGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGT 2129 Query 184086 CCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGA 184145 | ||||| ||||| || | | ||||||||| | || |||||||| ||||| || Sbjct 2130 AATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGA 2189 Query 184146 GCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTCCACTCCTGTGGCA 184203 |||||| |||||||||||||| | ||| | || ||| ||| || ||||| ||| Sbjct 2190 GCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 >seq316 Length=14323 Score = 518 bits (574), Expect = 4e-142 Identities = 739/1034 (71%), Gaps = 7/1034 (1%) Strand=Plus/Plus Query 185955 GGATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 186014 |||||||| ||| | | ||||||||| | || | ||||| ||||| || | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 186015 TCTGGATTACTTCTTTTTCCCACTGCTTATATG--GCAATTGGTGGCTGGCTTACTGGCA 186072 ||||| ||| | || | || |||| |||| || | ||||| |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 186073 CAACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTA 186132 | || ||||| || |||||||| || || || || ||| ||| | || ||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 186133 ATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTAC 186192 | || | || || ||||| |||||||| ||| | |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 186193 TT-TGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGG 186251 || ||||| || || ||||||| ||| ||| | |||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 186252 AATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAA 186311 | |||| | || | || || || |||| || |||||||| | || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTTTGTTTACGTCAGTTTGAG 10505 Query 186312 ATCAGTCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCT 186371 || | || || ||| | | || || || || ||||||||||| || ||||| || Sbjct 10506 ATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCT 10565 Query 186372 GTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCC 186431 || || || ||||| | || || ||| | || || | ||||| || ||||| Sbjct 10566 GTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCT 10625 Query 186432 TCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGG 186491 ||||| || || || ||||||||||| | || ||| | || || || || |||||| Sbjct 10626 AGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGG 10685 Query 186492 ACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCA 186551 ||||| ||||||||||| |||||||||||||| ||||| ||||||||||| | | | Sbjct 10686 ACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGT 10745 Query 186552 GCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACA 186611 || |||||||||| |||||| |||||||| | | ||||||||| || || ||||| Sbjct 10746 GCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACA 10805 Query 186612 TTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGA 186671 || | ||| || | | || ||| |||||||| ||||| ||||| || || ||| | Sbjct 10806 TTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 186672 TTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATG 186731 || |||||||| || || || |||| ||| || || | ||||| |||||||| ||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 186732 CTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTT 186791 | ||||| || |||| ||| | ||||| ||| ||||||||| | || | || | Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTA 10985 Query 186792 AACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTC 186851 || | | ||||||||||||||| |||||| | ||||| |||||||||||||| || Sbjct 10986 AATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTT 11045 Query 186852 GAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCA 186911 || || |||||||| || ||||| |||||||| |||||| | ||||| |||||||| || Sbjct 11046 GAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCA 11105 Query 186912 GTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCT 186971 ||||| || |||||||||||| |||| || || || || ||||| | || ||||| Sbjct 11106 CAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGCC 11165 Query 186972 CTGTGAT-ATAATG 186984 || | || |||||| Sbjct 11166 CTTTAATAATAATG 11179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622046963497680