Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq250 634 6e-177 seq316 533 2e-146 >seq250 Length=47047 Score = 634 bits (702), Expect = 6e-177 Identities = 774/1047 (74%), Gaps = 8/1047 (1%) Strand=Plus/Plus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTC 163978 ||||||| ||||| ||||| || || || || ||||| ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 163979 GGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCAT 164037 || || | |||||||| | | |||| ||| | ||| |||||||| || ||| | Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACTTC-TGTATTCATCATTGCATTCGT 1349 Query 164038 CGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTA 164097 | ||||||||| || || || ||||| ||||| ||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 164098 TGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTT 164157 || |||||||| ||||||||||||||||| || |||| ||||| ||| | ||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 164158 CTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCA 164217 |||||| || |||||||| || | | ||||| ||| | ||||||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 164218 ACTCGTTGTGTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAA 164275 || | || || ||||| | | || | || |||| |||||||||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGCT-ACATGGGTCGTGAGTGGGAA 1587 Query 164276 CTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCT 164335 ||| |||||| | ||||||||||||||||| || |||| ||||||||| || || Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 164336 GCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATG 164395 || || | ||| || ||| || |||| || | |||||||| |||||||||| ||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 164396 CCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATC 164455 ||| | || || ||||| || ||||||| |||| | || ||||| |||||||| ||||| Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 164456 CTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGT 164515 || |||||||| ||||| | || || || ||||| ||||| || ||||| |||||| Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 164516 GCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCC 164575 || ||||||||||| || || |||||| | | ||||| || || |||||||| || Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 164576 CAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCAC 164635 ||||||||||||||||| ||||| ||||||||||| || ||||| ||||| || || Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 164636 GGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCAC 164695 ||||||||||||||| | || |||||||| ||| ||||||||||| ||||| || ||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 164696 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACC 164755 |||||| | | |||||| ||||| ||||| ||||| || || | || || Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 164756 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164815 ||||| || ||| | || ||||||||||||||||| || | | || | || |||||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 164816 GTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCAC 164875 || | ||||| ||||| || | | ||||||||| | || |||||||| ||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 164876 GAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGAACACT-CCTGTTGC 164934 |||||||| |||||||||||||| | ||| | || ||| ||| | | || |||||||| Sbjct 2188 GAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGA-ATCTCTACCTGTTGC 2246 Query 164935 TCTCAAGGCACCTGCTGTTGGTTGATA 164961 | | || || |||||| | |||| Sbjct 2247 ATTAACAGCTCCAGCTGTTAATGGATA 2273 >seq316 Length=14323 Score = 533 bits (590), Expect = 2e-146 Identities = 743/1033 (72%), Gaps = 9/1033 (1%) Strand=Plus/Plus Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206 || ||||| ||| | | || |||||| | || ||||||||||| ||||| | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 165207 TCTGGACTTCTTCTTTTTCCCACTGCT--TATCTTGCTCTTGGGGGTTGGCTTACTGGGA 165264 ||||| | | || | || |||| |||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 165265 CTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAA 165324 ||||||| || || |||||||||||| || | || ||||| || | || ||| | Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 165325 ACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTC 165384 |||| | || || |||||||| |||||||| | |||||| || ||| || | ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 165385 -TATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGG 165443 | ||||| || || ||||||| || |||| | ||||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 165444 ACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGA 165502 |||||| | || | || || || |||| ||| |||||||| || || || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 165503 ACTGGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 165562 | ||| ||||| | ||| | | ||||| || ||||||||||| || || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 165563 TGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACC 165622 ||| ||||| || ||| | ||||||||| | || ||| | ||||| || || || Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 165623 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 165682 || || || || || ||||| |||| | | ||| | || || || |||||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 165683 GACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTC 165742 |||| | ||||| || || |||||||| ||||| ||||| | || || || || | | Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 165743 TGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACAC 165802 ||| || ||||||| ||| || || ||||| || | |||||||||||| || |||| Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 165803 TTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCG 165862 || | ||| ||| | ||||| || ||||| ||||| ||||| || || ||||| Sbjct 10805 ATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCG 10864 Query 165863 TTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTAT 165922 ||| ||||| || ||||||||| ||||||| || || | ||||| || |||||||| Sbjct 10865 TTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTAT 10924 Query 165923 GCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACT 165982 | | ||||| || || | || | ||||||||||| ||||| || | || | ||| | Sbjct 10925 GTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATT 10984 Query 165983 CAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTT 166042 ||| | | |||||||| ||||| |||||||| ||||||| || |||||||| || || Sbjct 10985 AAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATT 11044 Query 166043 TGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCC 166102 |||||| |||||||| ||||| || || | || ||||| | ||||| ||| ||||| | Sbjct 11045 TGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGC 11104 Query 166103 TGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGC 166162 ||| || |||||||| |||||| | ||||| || || || ||||| | || ||||| Sbjct 11105 ACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGC 11164 Query 166163 ACTTTAA-AATAA 166174 |||||| ||||| Sbjct 11165 CCTTTAATAATAA 11177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557633390370480