Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq250 670 0.0 seq316 488 7e-133 seq181 87.8 2e-12 >seq250 Length=47047 Score = 670 bits (742), Expect = 0.0 Identities = 782/1047 (75%), Gaps = 8/1047 (1%) Strand=Plus/Plus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 ||||||| ||||| ||||| || ||| | || ||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 ||||| | ||||| ||||| | | | ||| || ||||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 ||||||||||| || || || || || ||||||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 || |||||||| || |||||||||||| |||| |||| ||||||||| | ||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 ||| || || |||||||| |||||| | || |||||| | ||||| ||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAA 177945 || | | || ||||| | | ||| | || ||| ||||||||||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGC-TACATGGGTCGTGAGTGGGAA 1587 Query 177946 CTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCC 178005 ||| ||||| ||||||||||||| |||||| ||| |||| |||||||||||| || Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 178006 GCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATG 178065 || ||| ||||||||||| | | || || | |||||||| |||||||| | |||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 178066 CCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATC 178125 || | ||||| ||| || ||||||| |||| |||| |||||||| ||||| ||||| Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 178126 CTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGT 178185 || |||||||| |||||| || || || |||||||| |||||||| ||||| |||||| Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 178186 GCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGT 178245 || ||||||||||| || || ||||| | | |||||||| || || || ||| | Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 178246 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCAT 178305 |||||||||||||||||||||||||||||||| || || ||||| |||||||| ||| Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 178306 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCAC 178365 |||||||| ||||| | || |||||||| || ||||||||||| ||||| || ||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 178366 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 178425 |||||| | | |||||| ||||| ||||| ||||| || || | ||| || Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 178426 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAA 178485 ||||| || ||| | || ||||||||||||||||| || | | || || || || Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 178486 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCAC 178545 || | ||||| ||||| || | | ||||||||| | ||||||||||| ||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 178546 GAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAAAGCACT-CCTGTTGC 178604 |||||||| |||||||||||||| | ||| | || ||| || || | || |||||||| Sbjct 2188 GAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTG-AATCTCTACCTGTTGC 2246 Query 178605 TCTCACCGCACCTGCTGTTGGTTGATA 178631 | || || || |||||| | |||| Sbjct 2247 ATTAACAGCTCCAGCTGTTAATGGATA 2273 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 158205 TCGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGA 158264 ||||| |||||| ||||||||||| ||||| ||||||||| ||||| || |||||| | Sbjct 35103 TCGGGATGTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAA 35162 Query 158265 ATCCTATCACCCCGA 158279 ||||| ||| ||||| Sbjct 35163 ATCCTGTCATCCCGA 35177 >seq316 Length=14323 Score = 488 bits (540), Expect = 7e-133 Identities = 730/1029 (71%), Gaps = 8/1029 (1%) Strand=Plus/Plus Query 178833 GGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGG 178892 || ||||||||| | | ||||||||| | ||| | || || || ||||| | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 178893 TCAGGTCTTCTTCTGTTCCCTACTGCTTACATG--GCACTGGGCGGTTGGCTCACGGGCA 178950 || ||| | | || | ||| |||| | || || | || || ||||| || || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 178951 CAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTA 179010 | || || || || || ||||||||||| || | || ||| || | || || |||| Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 179011 ATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTC 179070 | ||| | || ||||| || |||||||| ||| | | | ||||| || || || ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCTTTA-TTATTC 10385 Query 179071 -TATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGG 179129 | ||||| ||||||||||| || |||||| | ||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 179130 CCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTT-CGGCAGTTTGA 179188 ||||| | || | || || || || | || |||||||| || || || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 179189 AATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGC 179248 || ||| | || || ||| | | ||||| || || || || ||||| || || || | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 179249 TGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCC 179308 ||| || || || || ||| | ||||||||| | || || | ||||| ||||| || Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 179309 GTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTG 179368 ||||| ||||| || || || | || || | ||| ||||||| || || ||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 179369 GACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTG 179428 |||| | || || ||||| |||||||||||||| ||||| || || || || || | || Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 179429 TGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATAC 179488 ||| || ||||||||||| || || || || | |||||||| ||||| | | || Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 179489 ATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCG 179548 ||| | || || || || ||| || || || ||||| ||||| || || ||||| Sbjct 10805 ATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCG 10864 Query 179549 TTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTAT 179608 ||| ||||| || || |||||| | || || || || | ||||||||||||||||| Sbjct 10865 TTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTAT 10924 Query 179609 GTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACT 179668 ||||||||| || || | ||| | ||||| | ||||| ||| | || | ||| | Sbjct 10925 GTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATT 10984 Query 179669 TAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTT 179728 || | ||||||||||||||||| || || || | ||||| |||||||||||||| || Sbjct 10985 AAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATT 11044 Query 179729 CGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACC 179788 || || |||||||| || || || |||||||| |||||| | ||||| |||||||| | Sbjct 11045 TGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGC 11104 Query 179789 AGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGC 179848 | ||||| || |||||||||||| |||| || || || || ||||| | || ||||| Sbjct 11105 ACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGC 11164 Query 179849 TCTGTGATA 179857 || | ||| Sbjct 11165 CCTTTAATA 11173 >seq181 Length=69431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 18369 GGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGGG 18428 |||| | || ||||||||||||||| | ||||||||||||||| ||| | |||||||| Sbjct 19482 GGGTCGATGCCCGAGTGGTTAATGGGGACGGACTGTAAATCCGTTGGTTATGCCTACGTA 19541 Query 18429 GGTTCAAATCCCTCCCTGCCCAT 18451 ||||||||||| | | |||||| Sbjct 19542 GGTTCAAATCCTACTCGGCCCAT 19564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596284734126240