Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq250 654 0.0 seq316 504 8e-138 >seq250 Length=47047 Score = 654 bits (724), Expect = 0.0 Identities = 767/1033 (74%), Gaps = 4/1033 (0%) Strand=Plus/Plus Query 169343 TGGGAACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTC 169402 ||||||| ||||| ||||| || |||||| |||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 169403 GGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATC 169462 || || | ||||| || | | |||| || || |||||||| || ||| | Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTT 1350 Query 169463 GGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTAT 169522 | |||||| || || || || || || ||||| ||||| |||||||||||| | | || Sbjct 1351 GCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATAC 1410 Query 169523 GGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTC 169582 ||||||||||| ||||||||||||||| | || ||| || || ||| |||||||| Sbjct 1411 GGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTC 1470 Query 169583 TATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAA 169642 || || || |||||||| || | | || || ||||| ||||||||||| | || Sbjct 1471 TACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCT 1530 Query 169643 CTGGTTGTCTTCCACTTCCTCATCGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAAT 169700 || | || || ||||| | | || | || |||| |||||||||||||||||||| Sbjct 1531 CTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGCT-ACATGGGTCGTGAGTGGGAAC 1588 Query 169701 TGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGG 169760 | ||| ||| | |||||||| ||||||||| |||||| | ||||||||| ||||| | Sbjct 1589 TTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAG 1648 Query 169761 CAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGC 169820 | || | ||||| ||| || |||||||| |||| ||||| |||||||| | ||||| Sbjct 1649 CTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGC 1708 Query 169821 CTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCC 169880 || | ||||| || || || || |||| |||| | || |||||||||||||| ||||| | Sbjct 1709 CTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTC 1768 Query 169881 TCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCG 169940 | |||||||| |||||| | |||||||| || || |||||||| ||||| || || | Sbjct 1769 TAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTG 1828 Query 169941 CGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCC 170000 | ||||||||| || || ||||| ||| | |||||||||| || || || || || Sbjct 1829 CTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTG 1888 Query 170001 AGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACG 170060 |||||||||||||||||||||||||||||||| || || ||||| ||||| || || | Sbjct 1889 CTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATG 1948 Query 170061 GTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACT 170120 ||||||| ||||| | || |||||||| ||| ||||||||||| |||||||| |||| Sbjct 1949 GTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACT 2008 Query 170121 TCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGA 170180 ||||| | | |||||| ||||| || || ||||| || || | ||| || || | Sbjct 2009 TCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTA 2068 Query 170181 TGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTG 170240 ||||||| ||| | || ||||||||||||||||| || | | || | || ||||||| Sbjct 2069 TGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTG 2128 Query 170241 TGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACG 170300 | | ||||| ||||| || | | ||||||||| | || |||||||| ||||| | Sbjct 2129 TAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATG 2188 Query 170301 AGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTGAGTCCACTCCTGTGGCAC 170360 ||||||| |||||||||||||| | ||| | || ||| ||| || ||||| ||| Sbjct 2189 AGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCAT 2248 Query 170361 TCACCGCTCCTGC 170373 | || ||||| || Sbjct 2249 TAACAGCTCCAGC 2261 >seq316 Length=14323 Score = 504 bits (558), Expect = 8e-138 Identities = 733/1028 (71%), Gaps = 8/1028 (1%) Strand=Plus/Plus Query 170589 GGGTGGTTCGATGTCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGG 170648 || ||||| ||| | | ||||||||| | || | || || ||||| || | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 170649 TCTGGACTTCTTCTTTTTCCCACTGCT--TATCTTGCAATTGGCGGCTGGCTTACGGGCA 170706 ||||| | | || | || |||| |||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 170707 CGACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTA 170766 | || ||||| ||| |||||| || || || | |||||||| ||| | |||||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 170767 ATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 170826 | ||| | ||||| || || ||||| || ||| || |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 170827 TT-TGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGG 170885 || ||||| || || |||| || |||||| | | |||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 170886 AATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTT-CGGCAGTTTGA 170944 | |||| | || | || || || |||| || |||||||| || || || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTT-TGTTTACGTCAGTTTGA 10504 Query 170945 AATCAGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGC 171004 || | || || || | ||||| || || || || ||||| || || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 171005 TGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACC 171064 |||||| || || || | || |||||| | || || | |||||||| || || || Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 171065 TTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTG 171124 | ||||| ||||| || ||||| | || | | ||| | || ||||| || ||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 171125 GACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTC 171184 ||| | |||||||| |||||||||||||| || ||||| || || ||||| || | | Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 171185 TGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACAC 171244 ||| || ||||||| ||| || || ||||| || | |||||||||||| || |||| Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 171245 CTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCG 171304 |||| || ||| | ||||| ||||| |||||||| ||||| || || || || Sbjct 10805 ATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCG 10864 Query 171305 TTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTAT 171364 ||| ||||| || ||||||||| | || || || || | ||| | ||||||||||| Sbjct 10865 TTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTAT 10924 Query 171365 GCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCT 171424 | ||||||| || || | ||| | ||| ||| | || ||| | || | || | Sbjct 10925 GTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATT 10984 Query 171425 TAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTT 171484 ||| | || |||||||| || ||| |||||| | ||||| ||||| ||||| || || Sbjct 10985 AAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATT 11044 Query 171485 CGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACC 171544 || || |||||||| || || || |||||||| |||||| |||||||||||||||| | Sbjct 11045 TGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGC 11104 Query 171545 AGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGC 171604 | ||| || || |||||||||||| | ||||||||||| ||||| || ||||| || || Sbjct 11105 ACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGC 11164 Query 171605 ACTTTGAT 171612 |||| || Sbjct 11165 CCTTTAAT 11172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592176088925280