Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1200 170 4e-37 seq970 149 1e-30 seq147 102 2e-16 seq2751 96.9 7e-15 seq2016 96.9 7e-15 seq2049 87.8 4e-12 >seq1200 Length=24482 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || |||| || | ||| || || || ||||||||||| | Sbjct 18669 CCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAG 18728 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || |||||||| || ||||| || |||||||| || || || || ||| Sbjct 18729 AGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGG 18788 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| |||||||| | || || Sbjct 18789 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACC 18848 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||||| ||||| || || |||||||| Sbjct 18849 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq970 Length=23808 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || |||| || || || || || |||||||| ||||| | Sbjct 22506 CCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGAC 22565 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || || ||||| ||||| || || ||||| ||| Sbjct 22566 AGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGG 22625 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| ||||| || || || ||||||| |||||||| | ||||| Sbjct 22626 ATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 22685 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| ||||| ||||| | ||||| ||||| |||||||| || Sbjct 22686 TCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGTT 22735 >seq147 Length=5172 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| || || | | || ||||| ||||||||||| ||||||||| |||||||| Sbjct 2986 TCCTTGTCATCGCCATACTCGTACCGCCACTGGATGTACTGGTTGGGCGTCTTGTCAAGA 3045 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| ||||| ||||| ||||||||||| || || || | ||| || |||||| Sbjct 3046 TGCATCTCAATGTGATGGAACGCGTGCTGTGCGACATATGCGACACGTGCGTTCGGATGC 3105 Query 316282 TTCCAAACGCTACC 316295 ||||| || |||| Sbjct 3106 TTCCACACATTACC 3119 >seq2751 Length=18403 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || ||||| || |||| || || ||||| ||| || ||||||||||| || ||| Sbjct 18402 TGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATC 18343 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || || || || |||| || ||||| || | || || ||||| ||||| ||||| || Sbjct 18342 TTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCCG 18283 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| || || |||||||| Sbjct 18282 GTCAGCGTCTTCACAAAAATCTGCAT 18257 >seq2016 Length=8234 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 274671 GCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCCG 274730 || || || |||||||| | ||| ||||| || ||||| |||||||| ||||| ||| Sbjct 4522 GCTTCGCGCACGTTCAGAAGCTTGCCGCGAAGCGGGAACACGCCATAGTAATCGCGACCG 4463 Query 274731 ATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATCAAA 274790 ||||||||||| || | |||||||| | | || || || ||||| || ||||||||| Sbjct 4462 ATGACCGAAAGGCCTGAAATCGCGAGCGCTTTGGCAGAGTCACCCTCCGTCAGAATCAAA 4403 Query 274791 GTACAC 274796 || ||| Sbjct 4402 GTGCAC 4397 >seq2049 Length=21382 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || |||| || | ||| || || |||||||||||||| | Sbjct 21255 CCTCCACGCAGGCGCAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCTGAC 21314 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| || |||| || || ||||| ||| Sbjct 21315 AGCGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 21374 Query 282993 ATACCCTC 283000 || ||||| Sbjct 21375 ATGCCCTC 21382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046698778203156