Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1200 165 6e-36 seq970 138 8e-28 seq2049 86.0 5e-12 >seq1200 Length=24482 Score = 165 bits (182), Expect = 6e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| || ||| |||||| || |||||||| || | | Sbjct 18669 CCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAG 18728 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| || ||||||||||| || |||||||| ||||||||||||| || Sbjct 18729 AGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGG 18788 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| |||||| ||| | | | || ||||| | ||| |||||| Sbjct 18789 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACC 18848 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || | ||| |||||||| ||||| || |||||||| ||||| ||||||||| Sbjct 18849 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGATG 18899 >seq970 Length=23808 Score = 138 bits (152), Expect = 8e-28 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| |||||||| || || | ||| || |||| ||||||||||| || ||||| Sbjct 22541 CTCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAA 22600 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| |||||||| |||| || | |||||||| || |||||| ||| | | Sbjct 22601 AATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATT 22660 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||||| ||| || ||||| |||||||||||||| || Sbjct 22661 ATCGATGGTGTCCGAGGACTCGACCTCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGAC 22720 Query 44326 GAAGATTTGCATGATG 44341 ||| || |||||| || Sbjct 22721 GAAAATCTGCATGTTG 22736 >seq2049 Length=21382 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || || ||| || | ||| | || ||||| ||||||||| |||||| ||||||||||| Sbjct 21248 TTACAATCCTCCACGCAGGCGCAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTA 21307 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| |||| ||||||||||| ||||| || |||| |||||||| || Sbjct 21308 GTCTGACAGCGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTC 21367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359977176427638