Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1200 168 6e-37 seq970 132 4e-26 seq2751 113 4e-20 seq2049 102 8e-17 >seq1200 Length=24482 Score = 168 bits (186), Expect = 6e-37 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||| ||||| || || | ||||| || || ||| ||||||||||||||| ||||| Sbjct 18666 CCGCCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCC 18725 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||| |||||| |||| || |||||||| || ||||| |||| |||||| || || | Sbjct 18726 GAGAGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGC 18785 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 || | || |||||||||| ||| | || || | ||| | | | ||||| ||||| Sbjct 18786 GGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTC 18844 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| | ||| ||||| || |||||||||||||| || || ||||||||| Sbjct 18845 CACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 18896 >seq970 Length=23808 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||| |||| || ||||||||| ||||||||||| || Sbjct 22505 GCCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGA 22564 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || ||||||||||| || || |||| |||||| ||||| | || Sbjct 22565 CAGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGG 22624 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||| | ||| | || || | || | | ||||| ||||| | Sbjct 22625 GATGCCTTCCTTGT-CTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGA 22683 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| ||| || || || ||||| || ||||| ||||||||||||||||| Sbjct 22684 CCTCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGTT 22735 >seq2751 Length=18403 Score = 113 bits (124), Expect = 4e-20 Identities = 118/150 (79%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 41716 CTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGAT 41775 |||||| |||||||| ||||||||||| ||||||| || | || |||||||||| ||| Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-TGAA 18345 Query 41776 TTTTTGC-TTCA-ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 | || || |||| | | | | |||||| |||||||||||| | ||| || || || Sbjct 18344 TCTTGGCCTTCACATTATCAATC-GTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTT 18286 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||||||||| || |||||||||||| Sbjct 18285 CCGGTCAGCGTCTTCACAAAAATCTGCATG 18256 >seq2049 Length=21382 Score = 102 bits (112), Expect = 8e-17 Identities = 96/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || ||||| ||||||||| ||||| ||||| || Sbjct 21255 CCTCCACGCAGGCGCAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCTGAC 21314 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || ||||| |||| || |||||||| |||||||| ||||||||||| |||||| ||||| Sbjct 21315 AGCGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 21374 Query 41755 A 41755 | Sbjct 21375 A 21375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462286582696800