Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10537 127 2e-24 seq12010 104 3e-17 seq7650 100 3e-16 seq1807 87.8 2e-12 >seq10537 Length=5798 Score = 127 bits (140), Expect = 2e-24 Identities = 206/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 ||||| |||||||| || ||||| || |||||| ||||| | | |||||||| Sbjct 5382 TTTAATGTATCATAAATTCCCTCAATGGAATCATCTTTCATGGTCAACAGAAAACACGAC 5323 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 |||| ||| ||||| ||||| | || || || || || ||||| || ||||||||| Sbjct 5322 GACAGCTGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGCATGAGTAAACCAT 5263 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCC 54525 |||| | | ||||||||||| || || || | ||| | ||| | || ||||| || Sbjct 5262 TTTTGACTCATCAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTCCATG-TGAATACC 5204 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAG 54585 | | || ||||| | ||||||||| ||||| || | || | |||| ||| || Sbjct 5203 GAGGGACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTTCTCCATTTAATTTGAG 5144 Query 54586 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 |||||||||| || | ||||||| ||| || |||| || |||||| || Sbjct 5143 CAAGTAGGATCGCTCAAGCGTTTTAATACCGAAGTAGTCATAATCAAAGTCCCG 5090 >seq12010 Length=13650 Score = 104 bits (114), Expect = 3e-17 Identities = 302/461 (66%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 23825 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 23884 ||| |||||||| || |||| ||||| || || | | |||| ||||| || | || Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 23885 ACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTT 23944 ||||| || ||||| ||||||| | || | ||||||| ||| ||| | ||| | Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTTAAATATTTTGGG 5447 Query 23945 AAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTC 24004 | || || || || || |||||| || ||||| || || ||| ||| ||| Sbjct 5448 ATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTTC 5507 Query 24005 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAA----TTCTTGTTCAA 24060 | |||||||| || || || ||||| || || || | ||| |||| | || Sbjct 5508 AGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTCG--CAT 5565 Query 24061 TAGAGACCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAA 24118 | | | || ||| | | ||| || | || |||| || || ||| || | Sbjct 5566 TTCA--CTGCATCTCTAACAATT--TCGTGAACAATTTCGTCTTTCAACTGATTCACGCA 5621 Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 24178 | ||| || ||| |||||||| ||| | || ||||| | |||||||| ||| Sbjct 5622 CTCCCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTC 5681 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 ||| |||||| || || ||||| | |||||||| || ||||||||||| | ||| Sbjct 5682 ATTGCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAA 5741 Query 24239 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 |||||| || || ||||| ||||| |||| | |||| Sbjct 5742 TGATCCGCTGAAAAATATTCCCTCTACACACGCATAAGCAA 5782 >seq7650 Length=7814 Score = 100 bits (110), Expect = 3e-16 Identities = 190/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 54352 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 54411 ||||||||| || || || || |||||| ||||| | | || ||||| || | Sbjct 3826 CGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAGGATAG 3885 Query 54412 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 54471 ||| ||||| || || ||| |||| || || || ||||| |||||||||||| Sbjct 3886 TTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCATTTTTG 3945 Query 54472 AGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTG 54530 | | | ||||||||| || ||||| | || | ||| | || || || || | | Sbjct 3946 ACTCATCAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATG-TGTATACCCAGCG 4004 Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGT 54590 |||||||||||||||||||| ||||| || | || || || | ||||| ||| | Sbjct 4005 ACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTCAACAAAT 4064 Query 54591 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 | ||| | |||| || || | ||||||||| | ||| Sbjct 4065 ACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTA 4101 >seq1807 Length=15346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 322/495 (65%), Gaps = 11/495 (2%) Strand=Plus/Minus Query 52796 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 52855 || || || | ||| |||||||| ||| | ||| || || || || ||||| |||||| Sbjct 9368 TCTTTATCAACTGTAAATTGAATAGGATGAGCTGCTGGCTTGGTCCGCAGATAATACATT 9309 Query 52856 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTC 52915 || || || | || |||||||||| ||||||||||| | || ||| || | | Sbjct 9308 CCTGTCTTCAACCCACGACTCCATCCATAAAAATGCATGGAAGAAAGCTTGCCAT-AGTT 9250 Query 52916 GGATCTGCT-ATATGGATATTCATAGATTGACTTTGATCGATGAA-GGCTCCCCTGTCTG 52973 | | || | |||| ||||| | ||||| ||||| | ||| || ||| || | Sbjct 9249 GCAATTGTTCATATAAATATTAAGGGATTGGGACTGATCAACGAATGGACCCCGTGCAAG 9190 Query 52974 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAA 53033 | ||||| | |||| | ||||| || |||||||||| ||||||||| | | || | Sbjct 9189 C-GCCATATCAATGACAATTTTTTGGGGGATTTCCCAAACAGTTTTATATAGGAGTTTTA 9131 Query 53034 TATCTTCTGGAAGGT-TTGTATT--CTGAATAGATCCACCATCTACCATAATCCTATTCT 53090 || ||||| | | || || | |||||| ||| || | || ||| | || | Sbjct 9130 GTTCGTCTGGTATTTCTTTTAATGATTGAATACTTCCGTGATAAAACAATATCTTGTTTT 9071 Query 53091 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT--AAC 53148 | | |||||||| | | | | | | | | | | | || | ||| ||| Sbjct 9070 TCAATGATTCATTCCAAATGTCTAATGCAATAAGATCGCGCAATAAGTGAGCATTCAAAC 9011 Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 | ||||||||||| |||| | ||| | |||| || | ||||| || || | Sbjct 9010 AA--ACAAATTCTCCAGCCAATGTGCGACGAATATAAACGTTGTTTGTATAAGGCTCAAA 8953 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 | |||| ||||| || | || || | || | ||| || |||||||| |||||||||| Sbjct 8952 ACACTCGTTATTGCCAAGTATCTGTGATGTCGTTGCTGTAGGCATAGGAGCCACCAATAG 8893 Query 53269 ACTATTTCTAAGACC 53283 ||||| | || ||| Sbjct 8892 GCTATTGCGAATACC 8878 Score = 86.0 bits (94), Expect = 7e-12 Identities = 197/297 (66%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 54346 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 |||||| ||||| |||| ||| || || || || ||||| | | | ||| || Sbjct 7322 TTTTAAAGTATCGTAGACGCCTTCAATGGAGTCTTCTTTCATGGTCAACAAAAAGCATGA 7263 Query 54406 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465 ||| | || |||| || || ||||| || || || || ||||| || ||| ||| Sbjct 7262 AGATAGCTGTGGACGTGGCGTGCCAGCATTGAACAAAGTCGGGGAAGCATGAATAATCCA 7203 Query 54466 TTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCC 54525 |||| | ||| |||||| || |||| || | || ||||| ||| || || Sbjct 7202 CTTTTGACTAAGACAATTGTAAGTTTCGAGGGCCGCATCAATATCTGGCAAATGGATACC 7143 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAG 54585 | || |||||||||||||| || || ||||| ||||| || ||| ||| |||| Sbjct 7142 CAATGATACACGCATTAACATATGTTGTGGTCTCTCAACAATTTTGCCGTTGGCCCTCAG 7083 Query 54586 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 ||| || || | || | ||||| | |||||| || | ||| | | |||| ||| Sbjct 7082 CAAATAAGAATATTGAAGTGTTTTGATACCAAAGTAATCATATTCATAATCTCTTTC 7026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593344519990320