Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq45910 87.8 1e-12 seq35091 87.8 1e-12 seq19824 86.0 5e-12 seq19166 82.4 6e-11 >seq45910 Length=1805 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25044 TTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTG 25103 ||| | || || || || || |||||||||||| || || ||| || ||| | Sbjct 451 TTCGTGAAGACTTTAACTGGTAAAACCATTACCTTAGATGTCGAGCCCAATGACACGATC 510 Query 25104 GCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTT 25163 || ||||| |||||| ||||| ||||| | ||| || ||||| | | Sbjct 511 CAAAATGTCAAGGCGAAAATTCAAGATAAGGAAGGAATACCCCCTGAACAACAGCGCTTG 570 Query 25164 ATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAG 25223 || |||||||| ||||||||||||||| | |||| | ||| |||||||||||||| Sbjct 571 ATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTTTAAGCGACTACAATATTCAAAAA 630 Query 25224 GAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| || | ||| |||||||||| || || || || Sbjct 631 GAAAGCACGTTGCACTTGGTGTTACGTTTGCGTGGTGG 668 >seq35091 Length=3122 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25044 TTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTG 25103 ||| | || || ||||| ||||||||||||||| || ||| || || ||| | Sbjct 1072 TTCGTGAAGACTTTGACCGGCAAAACCATTACCTTAGATGTTGAAGCCAACGACACGATC 1131 Query 25104 GCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTT 25163 || |||| ||||||| ||||| ||||| | ||| || |||||| | | Sbjct 1132 CAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCCCCTGAACAACAACGCTTG 1191 Query 25164 ATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAG 25223 || ||||| || |||||||||||||| | |||| | ||| ||||| |||||||| Sbjct 1192 ATTTTTGCAGGAAAACAATTGGAAGACGGAAGAACTTTAAGCGACTACAACATTCAAAAA 1251 Query 25224 GAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| || | ||| |||||||||| || || || || Sbjct 1252 GAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGG 1289 >seq19824 Length=8713 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| ||||| || ||||||||||| || ||||||| Sbjct 6559 ATGCAAATCTTTGTTAAAACCTTGACCGGAAAAACCATTACGTTGGACGTGGAACCCAAC 6500 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | || ||||| ||||| || || |||||| | || || ||| Sbjct 6499 GACACCATCCAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGAGCAA 6440 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || |||||||| ||||||||||| || ||| | |||| || ||| ||||| Sbjct 6439 CAACGTCTCATCTTTGCCGGCAAACAATTAGAGGATGGAAGAACTTTGAGCGACTACAAC 6380 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| ||| ||| | || |||| || || || || || || Sbjct 6379 ATCCAAAAAGAAAGTACCTTGCATTTGGTATTGCGTTTGCGTGGTGG 6333 >seq19166 Length=5045 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25044 TTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTG 25103 ||| | || || ||||| ||||||||||||||| || || || || ||| | Sbjct 4968 TTCGTGAAGACTTTGACAGGCAAAACCATTACCTTGGATGTCGAGCCGAATGACACGATC 4909 Query 25104 GCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTT 25163 || ||||| ||||| || || ||||| | ||| || |||||| | || Sbjct 4908 CAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGAACAACAACGCCTG 4849 Query 25164 ATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAG 25223 || ||||| || ||||||||||||||| | |||| | ||| ||||| |||||||| Sbjct 4848 ATTTTTGCAGGAAAACAATTGGAAGATGGAAGAACTTTAAGCGACTACAACATTCAAAAA 4789 Query 25224 GAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| || | ||| |||||||||| || || || || Sbjct 4788 GAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGG 4751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410542420371926