Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq41736 89.7 8e-13 seq38859 89.7 8e-13 seq49792 87.8 3e-12 seq45910 84.2 3e-11 seq19824 84.2 3e-11 >seq41736 Length=1031 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||||||||| || ||| |||||| || ||||| || | |||||| |||| Sbjct 134 AATACCAAATGCAATGTACTTTCTTTTTGGATGTTATAGTCAATCAAGGTTCTGTCATCA 75 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 |||||||| |||| ||||| ||||||| ||||| || |||||||| ||||| || ||| Sbjct 74 TCTAATTGCTTTCAGGCAAAGATCAATCATTGCTACTCTGGAGGAATGCCTTCATTGTCT 15 Query 146186 TG 146187 || Sbjct 14 TG 13 >seq38859 Length=993 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||||||||| || ||| |||||| || ||||| || | |||| || ||| Sbjct 509 AATACCAAATGCAACGTACTTTCTTTTTGGATGTTATAGTCACTCAAGGTTCGGCCATCC 450 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 |||||||| ||||||||||| ||||||| |||||| || || || || ||||| || ||| Sbjct 449 TCTAATTGCTTTCCAGCAAAGATCAATCGTTGCTGCTCTGGTGGGATGCCTTCCTTGTCT 390 Query 146186 TG 146187 || Sbjct 389 TG 388 >seq49792 Length=5355 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||| ||||||||||| || |||||| || || || || | ||| | || ||| Sbjct 1048 TAACACCAAATGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCTTAAAGTGCGGCCATC 989 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 |||||||||||||| ||||||||||| | ||| || || ||||| |||||||| || || Sbjct 988 TTCTAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGAGGGATTCCTTCCTTGTC 929 Query 146185 TTG 146187 ||| Sbjct 928 TTG 926 >seq45910 Length=1805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146047 CGTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATC 146106 || |||||||| | | || ||||| |||| || |||||| || |||||||| Sbjct 350 CGCTCCACCTCGTAAACGCAACACCAAGTGTAGCGTGCTTTCTTTTTGAATGTTATAATC 291 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | || || | ||| |||||||||||||||||||| || | || |||||| || || Sbjct 290 ACTCAAGGTCCTTCCATCTTCTAATTGTTTTCCAGCAAAGATTAGTCGTTGCTGTTCTGG 231 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| || ||||| Sbjct 230 AGGAATGCCTTCCTTGTCTTG 210 >seq19824 Length=8713 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | | || |||||||| ||||| ||||| || || || || Sbjct 6100 TTCCTCCTCTCAAACGCAACACCAAATGCAAAGTGCTCTCTTTTTGGATGTTGTAGTCAC 6159 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | || ||| || ||||||||||| |||||||| || | ||| || || |||| Sbjct 6160 TCAAAGTGCGGCCATCCTCCAATTGTTTTCCCGCAAAAATTAAACGTTGTTGCTCTGGAG 6219 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| |||||||| Sbjct 6220 GAATTCCTTCCTTATCTTG 6238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743054177089280