Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq40549 93.3 3e-14 seq11259 87.8 1e-12 >seq40549 Length=748 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 || ||||| ||||||||||||||| || || |||||||||||| || || |||| Sbjct 341 CAACACCAAGTGTAAAGTACTTTCCTTTTGAATGTTGTAGTCGCTCAATGTGCGACCGTC 282 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| |||||||| | ||||| || || || | || || || || Sbjct 281 TTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCTCAGGAGGAATGCCTTCTTTATC 222 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || || | |||| | | || ||||||| |||||| | Sbjct 221 CTGAAT-TTTGGCTTTAACATTTTGGATAGTATCGTTGGGCTCTACGTCCAACGTGATCG 163 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAA 34380 | || ||||| | |||||||| || Sbjct 162 TCTTACCGGTCAAGGTTTTCACGAA 138 >seq11259 Length=23860 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 ||||| || || | | || |||| || |||||||||||||| || ||||||||||| Sbjct 23640 AATCCACCTCGTAAACGCAAAACCAAATGCAAAGTACTTTCTTTTTGGATGTTGTAGTCA 23699 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 || |||| | || ||||| ||||| |||||||| || | || || || || | Sbjct 23700 CTCAAGGTACGGCCATCTTCCAATTGCTTTCCTGCGAAGATCAAACGTTGTTGCTCAGGG 23759 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTC 34338 || | | ||||| || || ||| ||||| | || || | ||| | | ||| Sbjct 23760 GGAATACCTTCCTTATCCTGGAT-TTTGGCTTTCACATTTTGGATGGTGTCGTTAGGTTC 23818 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || |||| |||||| ||||| ||||| | |||||| ||||| Sbjct 23819 CACATCCAACGTGATTGTTTTTCCGGTCAAAGTTTTGACAAA 23860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322871942611040