Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq12010 91.5 1e-13 seq22963 82.4 7e-11 >seq12010 Length=13650 Score = 91.5 bits (100), Expect = 1e-13 Identities = 232/348 (67%), Gaps = 9/348 (3%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 |||||| |||||| |||||||||||||| | ||| |||| || || ||| ||||| Sbjct 5637 ACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCATTGCTAAACGTAAG 5696 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 |||||||| | || || || || | ||||||||| || |||||| || || || Sbjct 5697 GCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAATGATCCGCTGAAAAA 5756 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 ||| || || || ||| | ||||||||||| | | | | | | | ||| || Sbjct 5757 TATTCCCTCTACACACGCATAAGCAACCAATCGTTGAATGAAAGGTGCTTCCTTA---TC 5813 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||| | ||||| ||||| || ||||| || || | || | || || || || Sbjct 5814 CATCCACTGCAATGCCCATTTTGCCTTCTGTTTCACGCATTCAATCTCGTCCATCGCGTT 5873 Query 16474 AAATAAATAAtttttttCTTT-GCTATCTAAAATATAAGTATCTATTAGTAA--ACTATA 16530 || || | | |||||||| || ||| | ||| || ||||| | || | ||| Sbjct 5874 GAACAAGTGCTGCTTTTCTTTGGCGTTCT-TCACATATGTGTCTATCAACAACGAGTATG 5932 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCA 16578 | ||| |||| || |||||||| ||||| |||||||||| Sbjct 5933 TCTCACTG--TGAACGTTTTCCATTGCAGCTTGAAACGCATAAAAGCA 5978 >seq22963 Length=1357 Score = 82.4 bits (90), Expect = 7e-11 Identities = 266/401 (66%), Gaps = 13/401 (3%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||||||||||||| || |||||||||| | ||| |||| || || ||| ||||| Sbjct 413 ACAAGCAAAATCAGTGTGAGATCCTTCGTCACGACTAATTAGTTCATTGATAAACGTAAG 354 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAAC--CAGAAAAG 16351 ||||| || | | | || || | ||||||||| || |||||| | | ||||| Sbjct 353 GCCTGGAATCAAACAATGCTTCTTTAGCCAAAATATTGCACAAAATGATCAGCTGAAAA- 295 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 |||| || || | |||| | ||||||||||| | | | | | | | ||| | Sbjct 294 -ATATTCCATCTGCACAGGCATAAGCAACCAATCGTTGAATGAAAGGTGCTTCATTA--T 238 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC-TCTATTGC 16470 || ||||||| ||||| ||||| || ||||| || || |||| ||| || || || Sbjct 237 TC-ATCCATTGCAATGCCCATTTTGCCTTCTGTTTCACGCA-TTCAATTTCGTCCATCGC 180 Query 16471 ATTAAATAAATAAtttttttCTTT-GCTATCTAAAATATAAGTATCTATTAGTAAACTAT 16529 || || || | | |||||||| || ||| || ||| || | ||| | || | Sbjct 179 GTTGAACAAGTGCTGCTTTTCTTTGGCGTTCTTCAA-ATATGTGTTTATCAACAACGAGT 121 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGG 16589 | | || |||| || ||||||| ||||| ||||||||||||| || || | Sbjct 120 ATGTCTCACTTTGAACGTTTTCCATTGAAGCTTGAAACGCATAAAAGCATCTTGCATCAG 61 Query 16590 ATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTC 16629 | ||| || ||| | | ||| |||| | ||| ||||| Sbjct 60 GCAATTGCACGTCATTAATGAAATTTTTC-GTTAAATTTTC 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462218252847400