Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq40549 109 4e-19 seq40838 107 2e-18 seq49792 98.7 8e-16 seq28421 98.7 8e-16 seq19824 98.7 8e-16 seq35091 96.9 3e-15 seq24352 95.1 1e-14 seq1246 93.3 3e-14 seq27925 91.5 1e-13 seq19166 91.5 1e-13 >seq40549 Length=748 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| || | || |||||||| | || || ||||| ||||||||||||||| || Sbjct 355 CCACCTCTTAAGCGCAACACCAAGTGTAAAGTACTTTCCTTTTGAATGTTGTAGTCGCTC 296 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | |||| |||| |||| ||| || || ||||| ||||| |||||||| || ||||| Sbjct 295 AATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCTCAGGAGGA 236 Query 45230 ACACCCTCCTTGTCCGCAATTTT 45252 | || || || ||| |||||| Sbjct 235 ATGCCTTCTTTATCCTGAATTTT 213 >seq40838 Length=12235 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | ||| || ||||| | |||||| || || ||||||||||| ||| | Sbjct 3747 GCCACCACGTAAACGTAACACTAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAATCGCT 3806 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 | |||| | || |||| ||||||||| ||||| ||||| || ||||| || ||||| Sbjct 3807 TAAAGTGCGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAGCGTTGTTGTTCAGGAGG 3866 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| || ||||||| |||||| | |||| ||| || Sbjct 3867 GATTCCTTCCTTTTCTTGAATTTTTGCCTTAACGTTTTGGATTGTGTCATTGGGCTCGAC 3926 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 || | ||||| || ||||| |||| |||||||||||| Sbjct 3927 ATCTAATGTAATGGTTTTGCCGGTCAAAGTCTTCACAAA 3965 >seq49792 Length=5355 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | ||| ||||| || | |||||| || || ||||||||||||||| | Sbjct 1063 GCCACCGCGCAAACGTAACACCAAATGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCT 1004 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 | ||| | || || | ||||||||| || || ||||| || ||||| || ||||| Sbjct 1003 TAAAGTGCGGCCATCTTCTAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGAGG 944 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| |||||| ||| || | |||| ||| || Sbjct 943 GATTCCTTCCTTGTCTTGAATTTTCGCCTTTACGTTTTGGATCGTGTCGTTGGGCTCGAC 884 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 || | |||||| || ||||| |||| ||||||||| || Sbjct 883 ATCTAAGGTAATAGTTTTGCCGGTCAAAGTCTTCACGAA 845 >seq28421 Length=944 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||| || ||||| | |||||| || || ||||||||||| || | | |||| | || Sbjct 6 TAACACTAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAACCGCTTAAAGTGCGACCATC 65 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||| ||||||||| ||||| ||||| || ||||| || ||||| | || ||||| || Sbjct 66 TTCCAATTGTTTTCCTGCGAAGATCAAGCGTTGTTGTTCAGGAGGGATTCCTTCCTTTTC 125 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||||||| |||||| | |||| ||| || || | ||||| || Sbjct 126 TTGAATTTTTGCCTTAACGTTTTGGATTGTGTCATTGGGCTCGACATCTAATGTAATGGT 185 Query 45304 CTTGCCCGTCAGAGTCTTCACAAA 45327 ||||| |||| |||||||||||| Sbjct 186 TTTGCCGGTCAAAGTCTTCACAAA 209 >seq19824 Length=8713 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | || ||||| |||| |||||||| || || ||||||||||| || Sbjct 6102 CCTCCTCTCAAACGCAACACCAAATGCAAAGTGCTCTCTTTTTGGATGTTGTAGTCACTC 6161 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || |||| ||||||||| || || || || || ||||| || ||||| Sbjct 6162 AAAGTGCGGCCATCCTCCAATTGTTTTCCCGCAAAAATTAAACGTTGTTGCTCTGGAGGA 6221 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || |||||| || || | | | |||| || || Sbjct 6222 ATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTCTGGATGGTGTCGTTGGGTTCAACG 6281 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| || || || |||| |||||| || ||||||||||| Sbjct 6282 TCCAACGTAATTGTTTTTCCAGTCAAAGTCTTAACGAAGATTTGCAT 6328 >seq35091 Length=3122 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG-- 45166 |||||| | ||| | ||| |||||||| | |||||| || || ||||||||||||||| Sbjct 1290 GCCACCACGCAAACGTAACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCT 1231 Query 45167 TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | |||| | |||| |||| ||||||||| || || ||||| || ||||| || || Sbjct 1230 TAAAGTT--CTTCCGTCTTCCAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGG 1173 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | || ||||| || ||||||| || || | |||| | || Sbjct 1172 GGGATTCCTTCCTTATCTTGAATTTTTGCTTTGACATTTTGGATCGTGTCGTTGGCTTCA 1113 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 || || | |||||| || ||||| |||| ||||||||| || Sbjct 1112 ACATCTAAGGTAATGGTTTTGCCGGTCAAAGTCTTCACGAA 1072 >seq24352 Length=2092 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | || || || ||||| ||||| ||||| ||||||||||||||| || Sbjct 694 CCACCTCTCAAGCGCAAGACAAAATGCAGGGTGCTTTCCTTTTGAATGTTGTAGTCGCTC 635 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || |||| ||| || || ||||| ||||| ||||| || || || || Sbjct 634 AAAGCGCGGCCATCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGCTGCTCTGGGGGA 575 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 | || | |||||| ||||| |||||| Sbjct 574 ATTCCTTAATTGTCCTGGATTTTGGTCTTAAC 543 >seq1246 Length=3490 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | || ||||| ||||| ||||| ||||| |||||||||||||| || Sbjct 285 CCACCTCTCAAACGCAAGACCAAATGCAGGGTGCTTTCCTTTTGAATGTTGTAGTCACTC 226 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| |||| || || | ||||| |||||||||||||| || || | Sbjct 225 AAGGTGCGGCCGTCTTCCAATT-CTTGCTAGCGAAAATCAACCGCTGTTGCTCTGG-GAA 168 Query 45230 ACACCCTCCTTGTCC 45244 | || ||||||||| Sbjct 167 ATTCCTTCCTTGTCC 153 >seq27925 Length=8008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 45108 CGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT 45167 |||| |||| |||| ||||||||||||| ||||| ||||| || |||||||| || Sbjct 7929 CGCCGCCTCGTAATCGCAATACCAAGTGCAATGTGCTTTCCTTTTGGATGTTGTAATCAC 7870 Query 45168 TCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225 ||| ||| ||| | || |||| ||| |||||||| || ||||| || || || || || Sbjct 7869 TCAAGGTT--CGACCATCCTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGCTCTGG 7812 Query 45226 AGGCACACCCTCCTTGTC 45243 || | || |||||||| Sbjct 7811 TGGAATGCCTTCCTTGTC 7794 >seq19166 Length=5045 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG-- 45166 |||||| | ||| | ||| |||||||| | |||||| || || ||||||||||||||| Sbjct 4750 GCCACCACGCAAACGTAACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCT 4809 Query 45167 TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | |||| | | || |||| ||||||||| || || |||| || ||||| || || Sbjct 4810 TAAAGTT--CTTCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGTTGTTCAGGG 4867 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | || |||||||| ||||| ||| || | |||| ||| Sbjct 4868 GGGATTCCTTCCTTGTCTTGGATTTTCGCCTTGACATTTTGGATCGTGTCATTCGGCTCG 4927 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 || |||| |||||| || ||||| |||| ||||||||| || Sbjct 4928 ACATCCAAGGTAATGGTTTTGCCTGTCAAAGTCTTCACGAA 4968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394830555731989